Rv0006 - p.Asp94Ser
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
1 RR-TB
6 HR-TB
133 MDR-TB
40 Pre-XDR-TB
1 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 5 |
| lineage2.2.2 | 53 |
| lineage2.2.1.1 | 11 |
| lineage2.2.1 | 75 |
| lineage4.2.2.2 | 4 |
| lineage4.3.4.1 | 3 |
| lineage3.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.1 | 1 |
| lineage4.3.3 | 5 |
| lineage4.1.1.3 | 6 |
| lineage4.8 | 5 |
| lineage3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
| lineage3 | 11 |
| lineage3;lineage4.6.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.9 | 3 |
| lineage4.2.1 | 2 |
| lineage2.1;lineage2.2.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.5 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4 | 1 |
| lineage4.4.2 | 2 |
| lineage4.7 | 1 |
| lineage4.3.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1.2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 208 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4813735 | MDR-TB | lineage4.1.2.1 | None | ERR13191623 | MDR-TB | lineage2.2.2 | None | SRR25389411 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR6824308 | MDR-TB | lineage2.2.1.1 | cn | SRR1167311 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025489 | MDR-TB | lineage2.2.2 | None | ERR4808914 | MDR-TB | lineage2.2.2 | za | ERR11773820 | MDR-TB | lineage2.2.1 | None | SRR11972179 | Sensitive | lineage2.2.1 | None | SRR28393643 | MDR-TB | lineage4.1.2.1 | None | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | SRR28045810 | MDR-TB | lineage2.2.1 | None | ERR8975806 | HR-TB | lineage4.3.4.1 | None | ERR4799369 | Other | lineage3.1.2 | None | SRR1165236 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173159 | MDR-TB | lineage2.2.2 | None | SRR14164499 | Other | lineage4.4.1.2 | None | SRR6280339 | Sensitive | lineage2.2.1 | cn | ERR8025644 | MDR-TB | lineage2.2.2 | None | ERR13291104 | MDR-TB | lineage2.1 | None | SRR22424885 | HR-TB | lineage4.1.2.1 | None | SRR29096359 | MDR-TB | lineage2.2.2 | None | SRR10430324 | MDR-TB | lineage2.2.1 | None | ERR9119200 | Sensitive | lineage2.2.1 | None | SRR25515634 | Sensitive | lineage2.2.1 | None | SAMN02403442 | Pre-XDR-TB | lineage2.2.2 | za | SRR5065660 | Sensitive | lineage2.2.1.1 | vn | SAMN02403447 | Pre-XDR-TB | lineage2.2.2 | za | ERR11798584 | MDR-TB | lineage2.2.1 | None | SAMN02403463 | MDR-TB | lineage2.2.2 | za | SAMN02403464 | MDR-TB | lineage2.2.2 | za | SAMN02403465 | MDR-TB | lineage2.2.2 | za | SAMN02403475 | MDR-TB | lineage2.2.2 | za | SRR13870410 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02403486 | MDR-TB | lineage2.2.2 | za | ERR11488733 | MDR-TB | lineage4.1.1.3 | None | SRR28044765 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865966 | MDR-TB | lineage4.8 | None | SRR25515594 | Sensitive | lineage2.2.1 | None | ERR2510707 | MDR-TB | lineage2.2.1 | it | ERR9993150 | MDR-TB | lineage2.2.1 | None | ERR9993088 | MDR-TB | lineage4.1.1.3 | None | ERR4829940 | Pre-XDR-TB | lineage3;lineage4 | pk | SRR25827309 | MDR-TB | lineage2.2.1.1 | None | ERR11488562 | MDR-TB | lineage4.3.4.2.1 | None | ERR8025580 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827356 | Pre-XDR-TB | lineage2.2.1.1;lineage2.2.1.2;lineage3 | None | ERR8665730 | MDR-TB | lineage2.2.1 | None | ERR4800128 | MDR-TB | lineage4.2.2.2 | None | ERR13266765 | MDR-TB | lineage3 | None | ERR4799328 | Other | lineage4.1.2.1 | None | SRR13232621 | MDR-TB | lineage2.2.1 | None | ERR5897097 | MDR-TB | lineage3;lineage4.6.2.1 | None | ERR1559742 | MDR-TB | lineage2.2.1 | None | SRR13232577 | MDR-TB | lineage2.2.1 | None | SRR25827528 | MDR-TB | lineage2.2.1.1 | None | SRR29385452 | Other | lineage2.2.1 | None | SRR1173338 | MDR-TB | lineage2.2.2 | None | SRR10303350 | MDR-TB | lineage2.2.1 | None | ERR1035283 | MDR-TB | lineage4.3.3 | br | SRR25827881 | MDR-TB | lineage2.2.1 | None | SRR1165293 | MDR-TB | lineage2.2.2 | None | SRR1173305 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173336 | Pre-XDR-TB | lineage2.2.2 | None | SRR25207043 | MDR-TB | lineage2.2.1 | None | SRR1173137 | Pre-XDR-TB | lineage2.2.2 | None | SRR29093339 | MDR-TB | lineage4.1.1.3 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | SRR3743407 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274153 | MDR-TB | lineage4.8 | None | SRR26397815 | MDR-TB | lineage4.3.4.1 | None | ERR4813153 | MDR-TB | lineage2.2.1 | None | SRR1173307 | MDR-TB | lineage2.2.2 | None | SRR29093862 | MDR-TB | lineage4.1.1.3 | None | SRR1165263 | MDR-TB | lineage2.2.2 | None | SRR1173377 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175342 | MDR-TB | lineage2.2.2 | None | SRR1173418 | MDR-TB | lineage2.2.2 | None | SRR28858458 | Sensitive | lineage3 | None | ERR13285546 | Other | lineage4.2.2.1 | None | SRR9970983 | MDR-TB | lineage4.3.3 | None | SRR13232550 | MDR-TB | lineage2.2.1 | None | SRR29093247 | MDR-TB | lineage2.2.1 | None | SRR14088370 | Pre-XDR-TB | lineage3 | None | ERR16022287 | MDR-TB | lineage2.2.1 | None | SRR29289245 | MDR-TB | lineage3 | None | ERR4798080 | MDR-TB | lineage2.2.1 | in | ERR13266661 | XDR-TB | lineage2.2.1 | None | SRR1165213 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173847 | MDR-TB | lineage2.2.2 | None | SRR10305958 | MDR-TB | lineage2.2.1.1 | None | ERR4799068 | Pre-XDR-TB | lineage2.2.1 | in | ERR11243585 | MDR-TB | lineage2.2.1 | None | SRR12006061 | Sensitive | lineage4.9 | None | SRR7652996 | MDR-TB | lineage4.2.1 | None | SRR14807539 | MDR-TB | lineage2.2.1 | None | SRR10341351 | MDR-TB | lineage2.1;lineage2.2.1 | None | SRR10828181 | MDR-TB | lineage2.1;lineage2.2.1 | None | ERR4813214 | MDR-TB | lineage2.2.1 | pe | SRR28646071 | Sensitive | lineage4.1.2.1 | None | SRR1173299 | MDR-TB | lineage2.2.2 | None | SRR28351583 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831430 | MDR-TB | lineage3 | None | ERR11773830 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045025 | MDR-TB | lineage2.2.1 | None | SRR1165241 | MDR-TB | lineage2.2.2 | None | ERR7911531 | MDR-TB | lineage2.2.2 | za | SRR1167275 | MDR-TB | lineage2.2.2 | None | ERR779896 | MDR-TB | lineage4.1.1.3 | pe | SRR1165216 | Pre-XDR-TB | lineage2.2.2 | None | ERR11044660 | MDR-TB | lineage2.2.1 | None | SRR24710119 | MDR-TB | lineage2.2.1 | None | ERR234641 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4817141 | Sensitive | lineage3 | gb | SRR6824418 | MDR-TB | lineage2.2.1.1 | cn | SRR20970062 | MDR-TB | lineage2.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR28119786 | MDR-TB | lineage2.2.2 | None | SRR1167259 | MDR-TB | lineage2.2.2 | None | SRR5065253 | Other | lineage2.2.1 | vn | SRR13232663 | MDR-TB | lineage2.2.1 | None | ERR4813105 | Pre-XDR-TB | lineage4.3.3 | None | SRR25389553 | MDR-TB | lineage2.2.1.1 | None | ERR8665848 | MDR-TB | lineage2.2.1 | None | SRR1173308 | MDR-TB | lineage2.2.2 | None | SRR1173612 | MDR-TB | lineage2.2.2 | None | SRR23938678 | MDR-TB | lineage2.2.1 | None | SRR29096712 | MDR-TB | lineage2.2.2 | None | SRR11871411 | MDR-TB | lineage2.2.1 | None | SRR25827613 | MDR-TB | lineage2.2.1.2 | None | SRR6797576 | Sensitive | lineage3 | None | SRR6356992 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR13870368 | MDR-TB | lineage2.2.1 | None | SRR14782738 | HR-TB | lineage2.2.1 | None | SRR23310936 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040312 | MDR-TB | lineage2.2.1 | None | ERR13291740 | Sensitive | lineage4.8 | None | SRR20969921 | Other | lineage4.5 | None | ERR9992836 | MDR-TB | lineage4.4.1.1.1 | None | ERR2516345 | MDR-TB | lineage2.2.1 | be | SRR1167276 | Pre-XDR-TB | lineage2.2.2 | None | ERR1035304 | MDR-TB | lineage4.3.3 | br | ERR2516063 | MDR-TB | lineage2.2.2 | za | ERR11067644 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830375 | Sensitive | lineage2.2.1 | vn | ERR11488803 | MDR-TB | lineage1.2.2.2 | None | ERR8025736 | MDR-TB | lineage2.2.2 | None | SRR14782743 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069405 | MDR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1723816 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29273895 | MDR-TB | lineage4 | None | SRR1723683 | MDR-TB | lineage2.2.1.1 | cn | SRR1723686 | MDR-TB | lineage2.2.1.1 | cn | SRR21747074 | MDR-TB | lineage4.4.2 | None | SRR24466796 | Pre-XDR-TB | lineage4.7 | None | SRR29096494 | MDR-TB | lineage2.2.2 | None | ERR13260013 | MDR-TB | lineage2.2.1 | None | SRR29906783 | Sensitive | lineage3 | None | ERR9907756 | MDR-TB | lineage4.3.4.1 | None | SRR29274081 | MDR-TB | lineage4.8 | None | SRR1165238 | Pre-XDR-TB | lineage2.2.2 | None | ERR13291052 | MDR-TB | lineage2.2.2 | None | SRR25827642 | MDR-TB | lineage2.2.1 | None | SRR25827456 | MDR-TB | lineage2.2.1 | None | SRR23861974 | Other | lineage4.8 | None | SRR1173149 | MDR-TB | lineage2.2.2 | None | SRR25534394 | Other | lineage2.2.1 | None | SRR13232551 | MDR-TB | lineage2.2.1 | None | SRR3105759 | Pre-XDR-TB | lineage3 | None | ERR3014596 | Pre-XDR-TB | lineage4.3.1 | tn | SRR6356938 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR5488553 | HR-TB | lineage4.9 | None | SRR1173331 | Pre-XDR-TB | lineage2.2.2 | None | SRR29385495 | Sensitive | lineage2.2.1 | None | SRR13355775 | MDR-TB | lineage2.2.1 | None | ERR10748484 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5488613 | HR-TB | lineage4.9 | None | ERR5758327 | Pre-XDR-TB | lineage2.2.2 | None | SRR7653001 | MDR-TB | lineage2.2.1 | None | SRR3647360 | MDR-TB | lineage2.2.1 | None | SRR14782660 | MDR-TB | lineage2.2.1 | None | SRR27069465 | MDR-TB | lineage4.4.2 | None | SAMN02403473 | Pre-XDR-TB | lineage2.2.2 | None | ERR13266546 | MDR-TB | lineage2.2.1 | None | SRR20969644 | MDR-TB | lineage2.2.1 | None | SRR28046334 | MDR-TB | lineage2.2.1 | None | SRR29093253 | MDR-TB | lineage2.2.2 | None | ERR8665731 | MDR-TB | lineage2.2.1 | None | SRR29385498 | Sensitive | lineage2.2.1 | None | SRR28389906 | Sensitive | lineage4.1.1.3 | None | SRR29096578 | MDR-TB | lineage2.2.2 | None | SRR1167313 | MDR-TB | lineage2.2.2 | None | ERR10748457 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR29230723 | MDR-TB | lineage2.2.1 | None | SRR25827778 | MDR-TB | lineage2.2.1 | None | SRR1167175 | MDR-TB | lineage2.2.2 | None | SRR29289237 | MDR-TB | lineage3.1.2.1 | None | SRR29289259 | RR-TB | lineage3 | None | SRR29539238 | MDR-TB | lineage2.2.1 | None | ERR2510568 | Pre-XDR-TB | lineage3 | pk | SRR29681224 | MDR-TB | lineage2.2.1 | None | SRR1165302 | MDR-TB | lineage2.2.2 | None | ERR4797340 | MDR-TB | lineage2.2.1 | in | ERR4797200 | MDR-TB | lineage3.1.2.1 | in | SRR27069435 | MDR-TB | lineage2.2.1 | None | ERR11083031 | Other | lineage4.2.2.2 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et |
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