Rv0667 - c.1297_1299dupTTC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
16 RR-TB
0 HR-TB
76 MDR-TB
27 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 62 |
| lineage4.3.4.2.1 | 7 |
| lineage2.2.1.1 | 6 |
| lineage4.6.2.2 | 3 |
| lineage4.8 | 4 |
| lineage4.1.2 | 1 |
| lineage3 | 4 |
| lineage4.6.2 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.1.2.1 | 8 |
| lineage4.1.1.3 | 1 |
| lineage6.2.2 | 1 |
| lineage4.3.3 | 3 |
| lineage4 | 2 |
| lineage1.2.2.2 | 3 |
| lineage1.1.2 | 3 |
| lineage4.2.1 | 1 |
| lineage4.6.1.2 | 2 |
| lineage5.1.3 | 1 |
| 1 | |
| lineage1.2.1.2.1 | 2 |
| lineage4.4.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR8422960 | MDR-TB | lineage2.2.1 | None | ERR13290666 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290667 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093981 | MDR-TB | lineage4.3.4.2.1 | None | SRR8365896 | MDR-TB | lineage2.2.1 | None | SRR26937053 | MDR-TB | lineage2.2.1.1 | None | SRR29055604 | MDR-TB | lineage4.3.4.2.1 | None | ERR8774255 | MDR-TB | lineage4.6.2.2 | None | ERR552971 | MDR-TB | lineage4.8 | None | ERR117716 | MDR-TB | lineage2.2.1 | None | SRR25207388 | Pre-XDR-TB | lineage2.2.1 | None | ERR13264907 | RR-TB | lineage4.1.2 | None | SRR29055672 | MDR-TB | lineage4.3.4.2.1 | None | ERR2510368 | Pre-XDR-TB | lineage3 | pk | SRR24114359 | RR-TB | lineage4.6.2 | None | SRR6964621 | MDR-TB | lineage3 | None | SRR8422493 | MDR-TB | lineage2.2.1 | None | ERR4829071 | RR-TB | lineage4.6.2.2 | ng | ERR11043746 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794362 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4813290 | MDR-TB | lineage4.1.2.1 | pe | ERR4809037 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2307641 | MDR-TB | lineage2.2.1 | None | ERR7911145 | MDR-TB | lineage2.2.1 | vn | ERR4810866 | Pre-XDR-TB | lineage2.2.1 | cn | SRR10869317 | MDR-TB | lineage4.3.4.2.1 | None | SRR1166938 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260109 | MDR-TB | lineage4.1.2.1 | None | ERR552970 | MDR-TB | lineage4.8 | None | SRR26331647 | RR-TB | lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR5917724 | MDR-TB | lineage2.2.1 | by | SRR1162726 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289270 | RR-TB | lineage2.2.1 | None | ERR4832019 | MDR-TB | lineage2.2.1 | vn | ERR10680147 | MDR-TB | lineage6.2.2 | None | ERR13290668 | Pre-XDR-TB | lineage2.2.1 | None | SRR21279371 | MDR-TB | lineage2.2.1.1 | None | ERR13290665 | Pre-XDR-TB | lineage2.2.1 | None | SRR22873602 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420286 | RR-TB | lineage2.2.1 | None | ERR13243520 | MDR-TB | lineage2.2.1 | None | SRR10303278 | MDR-TB | lineage4.3.3 | None | SRR10305628 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093954 | MDR-TB | lineage4 | None | SRR29016837 | MDR-TB | lineage1.2.2.2 | None | ERR114488 | MDR-TB | lineage2.2.1 | None | SRR29017588 | MDR-TB | lineage1.1.2 | None | ERR7737930 | MDR-TB | lineage4.3.4.2.1 | None | SRR29017577 | MDR-TB | lineage1.2.2.2 | None | ERR13260118 | MDR-TB | lineage4.1.2.1 | None | SRR16370394 | Pre-XDR-TB | lineage2.2.1 | None | ERR11775768 | MDR-TB | lineage2.2.1 | None | SRR28706658 | MDR-TB | lineage4.3.3 | None | ERR4822581 | MDR-TB | lineage4.2.1 | tm | ERR4812802 | MDR-TB | lineage4.1.2.1 | None | ERR4832037 | MDR-TB | lineage2.2.1 | vn | ERR10748569 | MDR-TB | lineage2.2.1 | None | SRR2100335 | MDR-TB | lineage2.2.1 | None | SRR2100367 | MDR-TB | lineage2.2.1 | None | SRR2100390 | MDR-TB | lineage2.2.1 | None | ERR550973 | RR-TB | lineage4.6.1.2 | cg | ERR751315 | RR-TB | lineage5.1.3 | gh | ERR2516464 | MDR-TB | lineage4.1.2.1 | pe | SRR5709773 | MDR-TB | lineage2.2.1 | th | SRR5817467 | MDR-TB | lineage3 | au | SRR6824682 | MDR-TB | lineage2.2.1 | cn | SRR6824525 | MDR-TB | lineage2.2.1.1 | cn | SRR6824286 | Pre-XDR-TB | lineage2.2.1 | cn | SRR13180309 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02350466 | RR-TB | lineage2.2.1 | za | SRR5065497 | MDR-TB | lineage2.2.1 | vn | ERR8025354 | MDR-TB | lineage4.1.2.1 | None | ERR13261599 | MDR-TB | lineage4.1.2.1 | None | ERR4553495 | MDR-TB | None | SRR20969541 | MDR-TB | lineage2.2.1 | None | SRR28119840 | RR-TB | lineage2.2.1 | None | SRR21576702 | RR-TB | lineage2.2.1 | None | SRR10430354 | MDR-TB | lineage4.3.3 | None | ERR117735 | MDR-TB | lineage2.2.1 | None | ERR3256143 | MDR-TB | lineage1.2.1.2.1 | ph | ERR3256144 | MDR-TB | lineage1.2.1.2.1 | ph | SRR29539172 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553861 | MDR-TB | lineage1.2.2.2 | None | SRR1723739 | Pre-XDR-TB | lineage2.2.1 | cn | ERR552970_ERR552971 | MDR-TB | lineage4.8 | None | SRR1723458 | MDR-TB | lineage2.2.1 | cn | SRR10767001 | MDR-TB | lineage2.2.1.1 | None | ERR13291046 | MDR-TB | lineage4.4.2 | None | ERR13194048 | RR-TB | lineage2.2.1 | None | ERR3639748 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662538 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866483 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040286 | MDR-TB | lineage2.2.1 | None | ERR3273212 | MDR-TB | lineage2.2.1 | None | SRR29056167 | MDR-TB | lineage4.3.4.2.1 | None | SRR1723705 | MDR-TB | lineage2.2.1.1 | None | ERR2510326 | MDR-TB | lineage3 | pk | SRR29017632 | MDR-TB | lineage1.1.2 | None | ERR13290770 | MDR-TB | lineage2.2.1 | None | SRR11662494 | MDR-TB | lineage2.2.1 | None | ERR3639764 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140948 | RR-TB | lineage2.2.1 | None | SRR18213900 | MDR-TB | lineage2.2.1 | None | SAMN02414989 | Pre-XDR-TB | lineage2.2.1 | se | ERR8773819 | Pre-XDR-TB | lineage2.2.1 | None | SRR2024999 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4553685 | RR-TB | lineage1.1.2 | None | SAMEA2535039 | MDR-TB | lineage4.8 | uz | ERR550972 | RR-TB | lineage4.6.1.2 | cg | SRR6824634 | MDR-TB | lineage4.4.2 | cn | SRR29093100 | MDR-TB | lineage4 | None | SRR29053139 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423633 | MDR-TB | lineage4.6.2.2 | None | SRR3055243 | MDR-TB | lineage2.2.1 | None | SRR28393630 | MDR-TB | lineage4.1.2.1 | None | SRR1019144 | RR-TB | lineage2.2.1 | None | SRR10766998 | MDR-TB | lineage2.2.1.1 | None | ERR11082316 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
