lineage | Count |
---|---|
lineage2.2.1 | 83 |
lineage4.1.2.1 | 3 |
lineage4.3.4.2 | 2 |
lineage3.1.2 | 9 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage2.1 | 1 |
lineage4.5 | 1 |
lineage3 | 8 |
lineage4.6.2.2 | 1 |
lineage2.2 | 5 |
lineage4.9 | 1 |
lineage4.4.2 | 1 |
lineage4.3.3 | 2 |
spoligotype | Count |
---|---|
None | 118 |
ID | Drug resistance | Lineage | Country iso2 | ERR5864741 | MDR-TB | lineage2.2.1 | None | ERR5865358 | MDR-TB | lineage2.2.1 | None | ERR5864738 | MDR-TB | lineage2.2.1 | None | ERR5864740 | MDR-TB | lineage2.2.1 | None | ERR5865359 | MDR-TB | lineage2.2.1 | None | ERR5864739 | MDR-TB | lineage2.2.1 | None | ERR5865472 | MDR-TB | lineage4.1.2.1 | None | ERR7910844 | MDR-TB | lineage4.3.4.2 | None | ERR5865473 | MDR-TB | lineage4.1.2.1 | None | ERR7911508 | MDR-TB | lineage2.2.1 | vn | ERR7910845 | MDR-TB | lineage4.3.4.2 | None | SRR1172305 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303293 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303288 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303330 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430318 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430365 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430383 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180185 | Pre-XDR-TB | lineage2.2.1 | None | SRR1174896 | Pre-XDR-TB | lineage2.2.1 | None | SRR11871416 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183041 | Pre-XDR-TB | lineage2.2.1 | None | SRR15014610 | MDR-TB | lineage3.1.2 | None | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232397 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232433 | MDR-TB | lineage2.2.1 | None | SRR13232419 | MDR-TB | lineage2.2.1 | None | SRR13232624 | XDR-TB | lineage2.2.1 | None | SRR13232659 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232400 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | SRR13232559 | MDR-TB | lineage2.2.1 | None | SRR15014680 | MDR-TB | lineage3.1.2 | None | SRR15014612 | Pre-XDR-TB | lineage3.1.2 | None | SRR15014644 | MDR-TB | lineage3.1.2 | None | SRR15014648 | MDR-TB | lineage3.1.2 | None | SRR15014702 | MDR-TB | lineage3.1.2 | None | SRR15014690 | MDR-TB | lineage3.1.2 | None | SRR18714788 | MDR-TB | lineage2.2.1 | None | SRR15014775 | MDR-TB | lineage3.1.2 | None | SRR15014767 | MDR-TB | lineage3.1.2 | None | SRR18714783 | MDR-TB | lineage2.2.1 | None | SRR18715065 | MDR-TB | lineage4.1.2.1 | None | SRR21747071 | MDR-TB | lineage2.1 | None | SRR18715191 | MDR-TB | lineage2.2.1 | None | SRR21746996 | MDR-TB | lineage4.5 | None | ERR11081992 | MDR-TB | lineage2.2.1 | None | ERR11081983 | MDR-TB | lineage2.2.1 | None | SRR22424739 | Pre-XDR-TB | lineage3 | None | SRR23938622 | MDR-TB | lineage2.2.1 | None | ERR11082339 | MDR-TB | lineage2.2.1 | None | SRR23938602 | MDR-TB | lineage2.2.1 | None | SRR3743475 | Pre-XDR-TB | lineage2.2.1 | None | SRR23938645 | MDR-TB | lineage2.2.1 | None | SRR23938671 | MDR-TB | lineage2.2.1 | None | SRR23938682 | MDR-TB | lineage2.2.1 | None | SRR23938701 | MDR-TB | lineage2.2.1 | None | SAMEA2534405 | MDR-TB | lineage2.2.1 | de | ERR158598 | MDR-TB | lineage2.2.1 | ru | SRR23938636 | MDR-TB | lineage2.2.1 | None | SRR3105796 | Pre-XDR-TB | lineage3 | None | ERR2677428 | Pre-XDR-TB | lineage2.2.1 | de | ERR4816723 | Pre-XDR-TB | lineage2.2.1 | gb | SRR5153820 | Pre-XDR-TB | lineage2.2.1 | None | ERR2041743 | MDR-TB | lineage2.2.1 | rs | ERR234630 | MDR-TB | lineage2.2.1 | ru | ERR2516893 | Pre-XDR-TB | lineage2.2.1 | gb | SRR2024925 | Pre-XDR-TB | lineage2.2.1 | cn | ERR234601 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4818871 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02628527 | Pre-XDR-TB | lineage2.2.1 | ir | SRR5341363 | Pre-XDR-TB | lineage3 | in | ERR2517073 | MDR-TB | lineage4.6.2.2 | gb | ERR2517032 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4827642 | MDR-TB | lineage2.2.1 | None | ERR2516779 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516788 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2517108 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516214 | MDR-TB | lineage2.2.1 | be | SRR23340056 | MDR-TB | lineage2.2 | None | SRR23340148 | MDR-TB | lineage2.2 | None | ERR4821107 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340036 | MDR-TB | lineage2.2 | None | SRR23340061 | MDR-TB | lineage2.2 | None | SRR23340107 | MDR-TB | lineage2.2 | None | SRR6831864 | MDR-TB | lineage2.2.1 | None | ERR4827643 | MDR-TB | lineage2.2.1 | None | ERR4827663 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822319 | MDR-TB | lineage2.2.1 | de | ERR4831019 | Pre-XDR-TB | lineage2.2.1 | np | ERR4821523 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4827540 | MDR-TB | lineage2.2.1 | None | ERR4822368 | MDR-TB | lineage4.9 | None | SRR6832119 | MDR-TB | lineage2.2.1 | None | SRR7516443 | MDR-TB | lineage2.2.1 | None | SRR6807707 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651555 | Pre-XDR-TB | lineage4.4.2 | cn | SRR8651634 | MDR-TB | lineage2.2.1 | cn | ERR133892 | MDR-TB | lineage2.2.1 | ru | ERR1034684 | MDR-TB | lineage4.3.3 | co | ERR1034677 | MDR-TB | lineage4.3.3 | co | ERR11043727 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794370 | MDR-TB | lineage2.2.1 | None | ERR133966 | MDR-TB | lineage2.2.1 | ru | ERR137265 | MDR-TB | lineage2.2.1 | ru | ERR3794425 | MDR-TB | lineage2.2.1 | None | ERR3794375 | MDR-TB | lineage2.2.1 | None | ERR3794416 | MDR-TB | lineage2.2.1 | None | ERR3794491 | MDR-TB | lineage2.2.1 | None | ERR3794436 | MDR-TB | lineage2.2.1 | None | ERR3794461 | MDR-TB | lineage2.2.1 | None | ERR3794473 | MDR-TB | lineage2.2.1 | None | ERR3794539 | MDR-TB | lineage2.2.1 | None | ERR3794492 | MDR-TB | lineage2.2.1 | None | ERR4797795 | Pre-XDR-TB | lineage3 | in | ERR4796392 | Pre-XDR-TB | lineage3 | in | ERR4797025 | Pre-XDR-TB | lineage3 | in | ERR4799207 | Pre-XDR-TB | lineage3 | None | ERR4798012 | Pre-XDR-TB | lineage3 | in |
---|