Rv0676c - c.2506_2508delTTGinsCC
Drug resistance types
2 Sensitive
3 RR-TB
30 HR-TB
2 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 21 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 7 |
| lineage2.2.1 | 2 |
| lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage2.1;lineage4.9 | 7 |
| 7 | |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La3 | 1 |
| lineage4.8 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 82 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045555 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR212001 | HR-TB | None | ERR4816999 | Other | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196546 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | SRR3675236 | Other | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675221 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11049020 | Other | lineage4.8 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR28119805 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4800341 | HR-TB | lineage3 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None |
|---|
