Rv0678 - c.139dupG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
10 MDR-TB
0 Pre-XDR-TB
237 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.2 | 4 |
| lineage2.2.1 | 74 |
| lineage2.2.1.2;lineage3 | 1 |
| lineage4.1.4 | 3 |
| lineage3 | 36 |
| lineage2.2.2 | 46 |
| lineage3.1 | 2 |
| lineage3.1.2 | 1 |
| 1 | |
| lineage4.3.3 | 23 |
| lineage4.1.1.3 | 6 |
| lineage4.8 | 12 |
| lineage2.2.1.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.5 | 4 |
| lineage4.1.2.1 | 7 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1.2 | 2 |
| lineage2.2.1.1 | 5 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| lineage1.1.2 | 1 |
| lineage4 | 2 |
| lineage4.2.2.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 248 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29017060 | XDR-TB | lineage1.2.2.2 | None | ERR13288933 | XDR-TB | lineage2.2.1 | None | ERR9030358 | XDR-TB | lineage2.2.1 | None | SRR25827318 | XDR-TB | lineage2.2.1.2;lineage3 | None | SRR6848321 | XDR-TB | lineage4.1.4 | None | ERR9993026 | XDR-TB | lineage3 | None | ERR9992823 | XDR-TB | lineage2.2.2 | None | ERR4553975 | XDR-TB | lineage3.1 | None | SRR29289321 | XDR-TB | lineage3 | None | ERR8975752 | XDR-TB | lineage2.2.1 | None | SRR12266248 | XDR-TB | lineage4.1.4 | None | SRR29289210 | Other | lineage3 | None | SRR29289232 | XDR-TB | lineage3 | None | SRR29289236 | XDR-TB | lineage3 | None | SRR29289284 | XDR-TB | lineage3 | None | SRR29289335 | XDR-TB | lineage3 | None | SRR29289336 | XDR-TB | lineage3 | None | SRR29289420 | XDR-TB | lineage3 | None | ERR1352350 | XDR-TB | lineage2.2.1 | cn | ERR4797756 | XDR-TB | lineage3 | in | ERR4797223 | XDR-TB | lineage3.1.2 | in | SRR29093128 | XDR-TB | lineage2.2.2 | None | SRR9971143 | XDR-TB | lineage2.2.2 | None | ERR13267129 | XDR-TB | lineage2.2.1 | None | ERR688031 | XDR-TB | lineage3 | None | SRR29093182 | XDR-TB | lineage2.2.2 | None | ERR11050991 | XDR-TB | lineage2.2.1 | None | ERR4553894 | XDR-TB | None | SRR28045577 | XDR-TB | lineage2.2.1 | None | ERR5917970 | XDR-TB | lineage4.3.3 | za | ERR9993232 | XDR-TB | lineage2.2.1 | None | SRR28706377 | XDR-TB | lineage2.2.1 | None | ERR4830950 | XDR-TB | lineage2.2.1 | np | ERR2515337 | XDR-TB | lineage4.1.1.3 | za | ERR1352357 | XDR-TB | lineage2.2.1 | cn | ERR1352356 | XDR-TB | lineage2.2.1 | cn | ERR1352358 | XDR-TB | lineage2.2.1 | cn | ERR1352353 | XDR-TB | lineage2.2.1 | cn | ERR11488678 | MDR-TB | lineage4.3.3 | None | ERR11488689 | MDR-TB | lineage4.3.3 | None | SRR29273736 | XDR-TB | lineage4.8 | None | SRR25827870 | XDR-TB | lineage2.2.1.2 | None | SRR28858755 | XDR-TB | lineage4.3.4.1 | None | ERR13262168 | XDR-TB | lineage2.2.1 | None | ERR9992964 | XDR-TB | lineage1.2.2.2 | None | ERR9992841 | XDR-TB | lineage4.3.3 | None | ERR9993258 | XDR-TB | lineage4.4.1.1.1 | None | ERR11488502 | XDR-TB | lineage4.3.3 | None | SRR9028480 | XDR-TB | lineage3 | None | SRR28044396 | XDR-TB | lineage3 | None | SRR28498546 | XDR-TB | lineage2.2.1 | None | ERR9992723 | XDR-TB | lineage2.2.2 | None | ERR13289277 | XDR-TB | lineage2.2.1 | None | ERR4831577 | XDR-TB | lineage2.2.1 | None | SRR25206910 | XDR-TB | lineage4.5 | None | ERR4797181 | XDR-TB | lineage3 | in | ERR4797661 | XDR-TB | lineage3 | in | ERR9992662 | XDR-TB | lineage2.2.1 | None | ERR9992957 | XDR-TB | lineage4.3.3 | None | ERR13289380 | XDR-TB | lineage2.2.2 | None | ERR13286153 | XDR-TB | lineage2.2.2 | None | ERR13288949 | XDR-TB | lineage2.2.2 | None | ERR13288955 | XDR-TB | lineage4.3.3 | None | ERR4553946 | XDR-TB | lineage2.2.1 | None | ERR13289355 | XDR-TB | lineage4.8 | None | ERR9993115 | XDR-TB | lineage2.2.1 | None | ERR9993243 | XDR-TB | lineage4.3.3 | None | ERR13286038 | XDR-TB | lineage4.1.2.1 | None | ERR9992695 | XDR-TB | lineage4.3.3 | None | ERR13288788 | XDR-TB | lineage4.4.1.1 | None | ERR9992761 | XDR-TB | lineage4.1.1.2 | None | ERR13288931 | XDR-TB | lineage2.2.1 | None | ERR9993012 | XDR-TB | lineage4.8 | None | ERR9992930 | XDR-TB | lineage4.8 | None | ERR13289377 | XDR-TB | lineage4.1.1.2 | None | ERR9992815 | XDR-TB | lineage2.2.2 | None | ERR9993113 | XDR-TB | lineage4.4.1.1.1 | None | ERR8975760 | XDR-TB | lineage4.1.2.1 | None | ERR9992727 | XDR-TB | lineage2.2.1.1 | None | ERR9992899 | XDR-TB | lineage2.2.1;lineage4.9 | None | ERR9992965 | XDR-TB | lineage2.2.1 | None | ERR9993108 | XDR-TB | lineage2.2.1 | None | ERR9993100 | XDR-TB | lineage3 | None | ERR9993081 | XDR-TB | lineage4.3.3 | None | ERR11489031 | XDR-TB | lineage2.2.2 | None | ERR8975668 | XDR-TB | lineage2.2.1 | None | ERR8975648 | XDR-TB | lineage2.2.1 | None | ERR5918020 | XDR-TB | lineage2.2.1 | za | ERR4808903 | XDR-TB | lineage2.2.2 | za | ERR4808856 | XDR-TB | lineage2.2.2 | za | ERR4808997 | XDR-TB | lineage2.2.2 | za | ERR4808866 | XDR-TB | lineage2.2.2 | za | ERR5918116 | XDR-TB | lineage4.1.2.1 | za | ERR11774835 | XDR-TB | lineage4.8 | None | SRR28045455 | XDR-TB | lineage3 | None | ERR11489056 | XDR-TB | lineage4.3.2 | None | ERR1352352 | XDR-TB | lineage2.2.1 | cn | SRR25827819 | XDR-TB | lineage2.2.1.2 | None | ERR9993019 | XDR-TB | lineage2.2.2 | None | ERR9992934 | XDR-TB | lineage4.8 | None | SRR29016833 | XDR-TB | lineage3.1 | None | ERR13288851 | XDR-TB | lineage2.2.1 | None | ERR9993064 | XDR-TB | lineage4.8 | None | ERR3276301 | XDR-TB | lineage2.2.1 | None | ERR13194083 | XDR-TB | lineage2.2.2 | None | SRR29096864 | XDR-TB | lineage2.2.1 | None | ERR13288847 | XDR-TB | lineage2.2.2 | None | ERR9993050 | XDR-TB | lineage2.2.2 | None | DRR130059 | XDR-TB | lineage4.5 | None | ERR13267032 | XDR-TB | lineage2.2.1 | None | ERR9992697 | XDR-TB | lineage4.1.1.3 | None | SRR25827617 | XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | ERR9992872 | XDR-TB | lineage2.2.1 | None | ERR9993004 | XDR-TB | lineage2.2.2 | None | SRR5817476 | XDR-TB | lineage1.1.2 | None | SRR9971062 | XDR-TB | lineage2.2.2 | None | ERR5758334 | XDR-TB | lineage2.2.2 | None | SRR11349170 | XDR-TB | lineage2.2.2 | None | ERR11773743 | XDR-TB | lineage4.1.1.3 | None | SRR9971117 | XDR-TB | lineage2.2.2 | None | ERR13266820 | XDR-TB | lineage3 | None | ERR8025652 | XDR-TB | lineage2.2.2 | None | SRR29273773 | XDR-TB | lineage4.1.2.1 | None | ERR9992628 | XDR-TB | lineage2.2.2 | None | ERR10748328 | MDR-TB | lineage2.2.1 | None | SRR25827344 | XDR-TB | lineage2.2.1.1 | None | ERR13288958 | XDR-TB | lineage4.3.3 | None | SRR29289265 | XDR-TB | lineage4.1.1.3 | None | SRR29289382 | XDR-TB | lineage3 | None | SRR29289412 | XDR-TB | lineage3 | None | SRR29289414 | XDR-TB | lineage3 | None | SRR29273876 | XDR-TB | lineage4.1.2.1 | None | ERR4797607 | XDR-TB | lineage2.2.1 | in | ERR13276174 | XDR-TB | lineage2.2.1 | None | ERR4799005 | XDR-TB | lineage3 | in | SRR10869039 | XDR-TB | lineage2.2.2 | None | ERR10112851 | XDR-TB | lineage2.2.1 | None | ERR8665699 | XDR-TB | lineage4.3.3 | None | SRR28351281 | XDR-TB | lineage2.2.1.1 | None | SRR28045932 | XDR-TB | lineage1.2.2.2 | None | ERR4830556 | XDR-TB | lineage2.2.2 | None | ERR4830565 | XDR-TB | lineage2.2.2 | None | ERR5918042 | XDR-TB | lineage4.3.3 | za | ERR8975807 | MDR-TB | lineage4.8 | None | ERR8975821 | XDR-TB | lineage4.3.3 | None | ERR9030317 | XDR-TB | lineage2.2.1 | None | ERR9992887 | XDR-TB | lineage2.2.2 | None | ERR8975005 | XDR-TB | lineage2.2.1 | None | SRR24710119 | MDR-TB | lineage2.2.1 | None | SRR26397809 | XDR-TB | lineage4.3.4.1 | None | ERR11488528 | MDR-TB | lineage4.3.3 | None | SRR28706693 | MDR-TB | lineage4.8 | None | ERR4829313 | XDR-TB | lineage4.8 | None | ERR4800460 | XDR-TB | lineage2.2.1 | in | ERR5897099 | XDR-TB | lineage3 | None | SRR19276599 | XDR-TB | lineage4.3.3 | None | ERR9992932 | XDR-TB | lineage1.2.2.2 | None | SRR21001882 | XDR-TB | lineage2.2.1 | None | SRR29017213 | XDR-TB | lineage4 | None | ERR9993005 | XDR-TB | lineage2.2.2 | None | SRR20632770 | XDR-TB | lineage2.2.1 | None | SRR28044944 | XDR-TB | lineage4.2.2.2 | None | SRR29093123 | XDR-TB | lineage2.2.2 | None | ERR13253330 | XDR-TB | lineage4.5 | None | SRR29093120 | XDR-TB | lineage2.2.2 | None | SRR25827642 | MDR-TB | lineage2.2.1 | None | ERR11488934 | XDR-TB | lineage2.2.2 | None | ERR11488954 | XDR-TB | lineage4.1.1.3 | None | ERR1352354 | XDR-TB | lineage2.2.1 | cn | ERR9992817 | XDR-TB | lineage2.2.2 | None | ERR11488841 | XDR-TB | lineage4.3.4.2.1 | None | SRR28351161 | XDR-TB | lineage2.2.1 | None | SRR28046345 | XDR-TB | lineage4.2.2.2 | None | ERR13288956 | XDR-TB | lineage2.2.2 | None | ERR13264953 | XDR-TB | lineage3 | None | ERR13260495 | XDR-TB | lineage2.2.2 | None | ERR9992656 | XDR-TB | lineage2.2.1 | None | SRR28044933 | XDR-TB | lineage2.2.1 | None | SRR25207318 | XDR-TB | lineage4.5 | None | SRR29289359 | XDR-TB | lineage3 | None | SRR29289380 | XDR-TB | lineage3 | None | SRR29289397 | XDR-TB | lineage3 | None | SRR24255938 | XDR-TB | lineage2.2.1 | None | SRR29081568 | XDR-TB | lineage4.3.4.2 | None | ERR13266637 | XDR-TB | lineage2.2.1.1 | None | SRR29289207 | XDR-TB | lineage3 | None | SRR25827884 | XDR-TB | lineage2.2.1 | None | ERR4799738 | XDR-TB | lineage3 | in | ERR4799933 | XDR-TB | lineage2.2.1 | in | ERR9029361 | XDR-TB | lineage2.2.2 | None | ERR9030482 | XDR-TB | lineage2.2.1 | None | ERR11043975 | XDR-TB | lineage2.2.1 | None | SRR13355779 | XDR-TB | lineage2.2.1 | None | ERR4553665 | MDR-TB | lineage4 | None | SRR28044949 | XDR-TB | lineage2.2.1 | None | ERR5897077 | XDR-TB | lineage3 | None | ERR5917976 | XDR-TB | lineage4.3.3 | za | ERR5918016 | XDR-TB | lineage2.2.1 | za | ERR8975717 | XDR-TB | lineage4.1.1.3 | None | ERR8975813 | XDR-TB | lineage2.2.2 | None | ERR1034599 | XDR-TB | lineage3 | pk | SRR9971254 | XDR-TB | lineage2.2.2 | None | ERR8975982 | XDR-TB | lineage4.3.3 | None | ERR1352351 | XDR-TB | lineage2.2.1 | cn | ERR1352355 | XDR-TB | lineage2.2.1 | cn | SRR29094091 | XDR-TB | lineage2.2.1 | None | ERR11488867 | XDR-TB | lineage4.3.4.2.1 | None | ERR9993076 | XDR-TB | lineage2.2.2 | None | ERR13264958 | XDR-TB | lineage3 | None | ERR10748106 | XDR-TB | lineage2.2.1 | None | SRR9028478 | XDR-TB | lineage3 | None | SRR9028491 | XDR-TB | lineage3 | None | ERR9992893 | XDR-TB | lineage4.3.3 | None | SRR29017391 | XDR-TB | lineage2.2.1 | None | ERR9993126 | XDR-TB | lineage2.2.2 | None | ERR9992865 | XDR-TB | lineage4.8 | None | ERR4799951 | XDR-TB | lineage2.2.1 | None | ERR13289276 | XDR-TB | lineage4.1.2.1 | None | ERR3276302 | XDR-TB | lineage2.2.1 | None | ERR4800476 | XDR-TB | lineage2.2.1.1 | in | ERR2515301 | XDR-TB | lineage2.2.1 | za | ERR8975509 | XDR-TB | lineage4.4.1.1 | None | ERR8975762 | XDR-TB | lineage2.2.1 | None | ERR5917997 | XDR-TB | lineage2.2.2 | za | SRR20632777 | XDR-TB | lineage2.2.1 | None | ERR13260865 | XDR-TB | lineage2.2.2 | None | ERR13288936 | XDR-TB | lineage2.2.1 | None | SRR28044688 | XDR-TB | lineage3 | None | ERR11488654 | MDR-TB | lineage4.3.3 | None | SRR29096587 | XDR-TB | lineage2.2.1 | None | DRR130166 | XDR-TB | lineage2.2.1 | None | ERR9992931 | XDR-TB | lineage4.8 | None | SRR22873606 | XDR-TB | lineage2.2.1 | None | SRR9971329 | XDR-TB | lineage2.2.2 | None | ERR13288920 | XDR-TB | lineage4.1.2.1 | None | ERR5864810 | XDR-TB | lineage4.3.3 | None | ERR13288943 | XDR-TB | lineage4.3.3 | None | ERR11488983 | XDR-TB | lineage2.2.2 | None | SRR29017199 | XDR-TB | lineage4.1.1.1 | None | ERR13264940 | XDR-TB | lineage3 | None | SRR12266251 | XDR-TB | lineage4.1.4 | None | ERR13261164 | XDR-TB | lineage2.2.1 | None | ERR9993084 | XDR-TB | lineage4.3.2.1 | None | SRR29093355 | XDR-TB | lineage2.2.1 | None | SRR29385293 | XDR-TB | lineage2.2.2 | None | SRR21001883 | XDR-TB | lineage2.2.1 | None | ERR8665698 | XDR-TB | lineage4.3.3 | None | SRR22873603 | XDR-TB | lineage2.2.1 | None |
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