Rv2043c - p.Leu172Pro
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
11 HR-TB
91 MDR-TB
137 Pre-XDR-TB
18 XDR-TB
7 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 143 |
| lineage1.1.1 | 1 |
| lineage4.3.3 | 19 |
| lineage4.1.2.1 | 9 |
| lineage5.2 | 3 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage4.3.4.1 | 10 |
| lineage4.1.1.3 | 2 |
| lineage4.8 | 16 |
| lineage4.9 | 4 |
| lineage4 | 3 |
| lineage1.1.1.1 | 1 |
| lineage3 | 17 |
| lineage4.3.2.1 | 13 |
| lineage2.1 | 1 |
| lineage4.2.2.2 | 5 |
| lineage4.4.2 | 4 |
| lineage4.3.4.2 | 1 |
| lineage1.2.2.1 | 1 |
| lineage4.5 | 1 |
| lineage6.2.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.1.3 | 1 |
| lineage2.2.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1.2;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 265 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMN02419640 | Pre-XDR-TB | lineage2.2.1 | by | SRR11662290 | Pre-XDR-TB | lineage1.1.1 | None | ERR6362673 | HR-TB | lineage4.3.3 | None | SRR1180923 | Pre-XDR-TB | lineage2.2.1 | None | ERR751403 | MDR-TB | lineage4.3.3 | pe | ERR8665845 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665521 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665990 | MDR-TB | lineage2.2.1 | None | ERR4829082 | MDR-TB | lineage4.1.2.1 | it | ERR2706928 | MDR-TB | lineage5.2 | cd | ERR8665857 | MDR-TB | lineage2.2.1 | None | ERR8665860 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR13232746 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975830 | HR-TB | lineage4.3.3 | None | SRR16058218 | MDR-TB | lineage4.3.4.1 | None | ERR6362510 | MDR-TB | lineage4.3.3 | None | ERR2515594 | MDR-TB | lineage4.1.1.3 | za | SRR28858381 | MDR-TB | lineage4.3.4.1 | None | ERR1034811 | MDR-TB | lineage4.8 | pt | ERR1034839 | MDR-TB | lineage4.8 | pt | SRR5163959 | Other | lineage4.9 | None | SRR6458393 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419629 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419597 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419606 | Pre-XDR-TB | lineage2.2.1 | by | SRR13232586 | MDR-TB | lineage2.2.1 | None | ERR13260567 | MDR-TB | lineage4 | None | ERR7801194 | HR-TB | lineage4.3.3 | None | SRR18715337 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710284 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665859 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458418 | Pre-XDR-TB | lineage2.2.1 | None | SRR5073726 | Other | lineage1.1.1.1 | vn | ERR552395 | MDR-TB | lineage2.2.1 | None | SRR1159389 | MDR-TB | lineage2.2.1 | None | SRR9028480 | XDR-TB | lineage3 | None | ERR9993137 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1159986 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917687 | MDR-TB | lineage2.2.1 | by | SRR1158988 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183959 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163025 | Pre-XDR-TB | lineage2.2.1 | None | ERR7801228 | HR-TB | lineage4.3.3 | None | ERR8665642 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458450 | MDR-TB | lineage2.2.1 | None | SRR16088578 | MDR-TB | lineage2.2.1 | None | SRR24710281 | MDR-TB | lineage2.2.1 | None | ERR9786706 | Other | lineage4.8 | None | SRR1174857 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260159 | MDR-TB | lineage4.1.1.3 | None | SRR12062522 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665680 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680163 | MDR-TB | lineage4.1.2.1 | None | SRR1180963 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156785 | MDR-TB | lineage4.3.2.1 | None | SRR16156742 | MDR-TB | lineage4.3.2.1 | None | ERR13284918 | MDR-TB | lineage2.2.1 | None | SRR16156818 | MDR-TB | lineage4.3.2.1 | None | ERR13289495 | MDR-TB | lineage2.2.1 | None | SRR13232515 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231326 | MDR-TB | lineage5.2 | None | SRR1159861 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424837 | MDR-TB | lineage3 | None | SRR6458403 | Pre-XDR-TB | lineage2.2.1 | None | SRR30180332 | Pre-XDR-TB | lineage2.1 | None | SRR29681398 | MDR-TB | lineage2.2.1 | None | ERR8665518 | MDR-TB | lineage2.2.1 | None | SRR13232416 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748079 | XDR-TB | lineage4.3.2.1 | None | SRR924717 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289380 | XDR-TB | lineage3 | None | SRR29289390 | XDR-TB | lineage4.2.2.2 | None | SRR29289403 | XDR-TB | lineage4.2.2.2 | None | SRR1168958 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458432 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289335 | XDR-TB | lineage3 | None | SRR29289336 | XDR-TB | lineage3 | None | ERR4829945 | MDR-TB | lineage3 | pk | ERR13284430 | MDR-TB | lineage4.4.2 | None | ERR4796847 | Pre-XDR-TB | lineage4.3.3 | in | SRR1169129 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153721 | MDR-TB | lineage2.2.1 | None | SRR6458428 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458454 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261966 | Pre-XDR-TB | lineage2.2.1 | None | ERR2041801 | MDR-TB | lineage4.8 | None | SRR29017062 | MDR-TB | lineage4.9 | None | SRR16156746 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR1163050 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169050 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172101 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665992 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665679 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169120 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665804 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665525 | Pre-XDR-TB | lineage2.2.1 | None | ERR751541 | MDR-TB | lineage4.3.4.1 | pe | ERR1555044 | MDR-TB | lineage4.3.4.2 | None | ERR8665806 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665818 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715045 | Pre-XDR-TB | lineage2.2.1 | None | ERR550665 | MDR-TB | lineage4.1.2.1 | None | ERR067709 | MDR-TB | lineage2.2.1 | ru | ERR2516868 | Pre-XDR-TB | lineage4.2.2.2 | gb | SRR1159294 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163121 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163313 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184125 | MDR-TB | lineage2.2.1 | None | SRR14270079 | MDR-TB | lineage2.2.1 | None | SRR29681221 | MDR-TB | lineage2.2.1 | None | ERR182035 | Other | lineage4.3.3 | mw | ERR1034832 | MDR-TB | lineage4.8 | pt | ERR4132457 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419609 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419569 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419588 | MDR-TB | lineage2.2.1 | by | SAMN02419558 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419628 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419612 | Pre-XDR-TB | lineage2.2.1 | by | SRR1181025 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680074 | MDR-TB | lineage4.1.2.1 | None | SRR9028478 | XDR-TB | lineage3 | None | DRR130073 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993263 | XDR-TB | lineage4.3.2.1 | None | ERR8665796 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163348 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665543 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993138 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4553791 | MDR-TB | lineage4.9 | None | ERR2516365 | MDR-TB | lineage2.2.1 | be | ERR553072 | MDR-TB | lineage2.2.1 | None | SRR1181093 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043693 | MDR-TB | lineage4.1.2.1 | None | ERR10748113 | XDR-TB | lineage4.3.2.1 | None | ERR13261364 | Pre-XDR-TB | lineage4.8 | None | ERR8665641 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539546 | MDR-TB | lineage2.2.1 | None | SRR1163336 | Pre-XDR-TB | lineage2.2.1 | None | SRR1159384 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284446 | MDR-TB | lineage4.4.2 | None | SRR16156715 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR29772668 | MDR-TB | lineage1.2.2.1 | None | SRR29273720 | MDR-TB | lineage4.8 | None | ERR7801193 | HR-TB | lineage4.3.3 | None | ERR7801227 | HR-TB | lineage4.3.3 | None | ERR8665795 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172387 | XDR-TB | lineage2.2.1 | None | SRR18715340 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260573 | MDR-TB | lineage4 | None | ERR13284897 | MDR-TB | lineage4.8 | None | ERR13260545 | MDR-TB | lineage4 | None | SRR29274036 | MDR-TB | lineage4.8 | None | SRR1162541 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232581 | Pre-XDR-TB | lineage2.2.1 | None | SRR19428611 | HR-TB | lineage4.3.3 | None | SRR1158898 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258492 | Pre-XDR-TB | lineage2.2.1 | None | ERR13264940 | XDR-TB | lineage3 | None | SRR21576647 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284503 | MDR-TB | lineage2.2.1 | None | ERR10680034 | MDR-TB | lineage4.1.2.1 | None | ERR8665825 | Pre-XDR-TB | lineage2.2.1 | None | ERR10679997 | MDR-TB | lineage4.1.2.1 | None | SRR6458460 | Pre-XDR-TB | lineage2.2.1 | None | ERR9786363 | Other | lineage4.8 | None | SRR12420636 | MDR-TB | lineage4.5 | None | ERR4827475 | MDR-TB | lineage2.2.1 | None | ERR13284505 | MDR-TB | lineage2.2.1 | None | SRR1181080 | Pre-XDR-TB | lineage2.2.1 | None | SRR9028482 | Pre-XDR-TB | lineage3 | None | SRR14088393 | XDR-TB | lineage3 | None | SRR16156734 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR1163429 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043769 | MDR-TB | lineage4.4.2 | None | SRR6458384 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080947 | MDR-TB | lineage4.4.2 | None | ERR3794532 | MDR-TB | lineage2.2.1 | None | ERR4800554 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | in | ERR10680183 | MDR-TB | lineage4.9 | None | ERR4132459 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419590 | Pre-XDR-TB | lineage2.2.1 | by | SRR28714179 | MDR-TB | lineage2.2.1 | None | ERR8665856 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831436 | Pre-XDR-TB | lineage3 | None | ERR10680206 | RR-TB | lineage6.2.2 | None | SRR1162952 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163404 | Pre-XDR-TB | lineage2.2.1 | None | SRR958498 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277288 | Pre-XDR-TB | lineage2.2.1 | None | ERR144566 | MDR-TB | lineage2.2.1 | ru | ERR2510242 | MDR-TB | lineage4.3.3 | pe | ERR2041785 | Pre-XDR-TB | lineage4.2.2.1 | rs | SRR13232769 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172238 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232751 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056155 | MDR-TB | lineage4.3.3 | None | ERR13266678 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR11775835 | HR-TB | lineage4.3.3 | None | SRR6458463 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419533 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419556 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419570 | Pre-XDR-TB | lineage2.2.1 | by | SRR16156711 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR3725719 | MDR-TB | lineage4.1.3 | ci | ERR11082043 | MDR-TB | lineage4.8 | None | SRR1180976 | MDR-TB | lineage2.2.1 | None | SRR22424826 | MDR-TB | lineage3 | None | SRR28351165 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515355 | MDR-TB | lineage2.2.2 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR4812268 | MDR-TB | lineage4.3.3 | None | ERR2041802 | MDR-TB | lineage4.8 | None | ERR8665812 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665517 | MDR-TB | lineage2.2.1 | None | ERR9125443 | MDR-TB | lineage4.3.4.1 | None | SRR13232738 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184036 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458388 | Pre-XDR-TB | lineage2.2.1 | None | ERR9786665 | Other | lineage4.8 | None | SRR7652984 | Pre-XDR-TB | lineage4.8 | None | SRR6930905 | Pre-XDR-TB | lineage2.2.1 | None | ERR7801275 | HR-TB | lineage4.3.3 | None | ERR9786246 | Other | lineage4.8 | None | ERR13260048 | MDR-TB | lineage4.3.4.1 | None | ERR9119890 | MDR-TB | lineage4.3.3 | None | ERR3256255 | MDR-TB | lineage4.3.4.1 | ph | SRR26937055 | MDR-TB | lineage2.2.1 | None | SRR6896223 | HR-TB | lineage4.3.3 | None | ERR8665544 | Pre-XDR-TB | lineage2.2.1 | None | SRR29081022 | MDR-TB | lineage4.3.4.1 | None | ERR2600591 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181196 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040156 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181103 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017702 | MDR-TB | lineage1.1.3.1 | None | SRR29080991 | MDR-TB | lineage4.3.4.1 | None | SRR1181155 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172368 | Pre-XDR-TB | lineage2.2.1 | None | SAMN11603930 | Pre-XDR-TB | lineage3.1.2;lineage4.9 | None | ERR13264953 | XDR-TB | lineage3 | None | SRR1159262 | MDR-TB | lineage2.2.1 | None | SRR9028493 | Pre-XDR-TB | lineage3 | None | SRR6458449 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831507 | Pre-XDR-TB | lineage3 | None | SRR1163101 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162529 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181097 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181149 | Pre-XDR-TB | lineage2.2.1 | None | ERR4162031 | MDR-TB | lineage5.2 | None | SRR29289379 | XDR-TB | lineage3 | None | SRR1181152 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829974 | MDR-TB | lineage3 | pk | ERR7801226 | HR-TB | lineage4.3.3 | None | SRR6458412 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289389 | XDR-TB | lineage4.2.2.2 | None | SRR29289429 | XDR-TB | lineage4.2.2.2 | None | SRR6458426 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156759 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR4797676 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4799286 | Pre-XDR-TB | lineage4.8 | in | SRR16156824 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR14807646 | Pre-XDR-TB | lineage4.2.1 | None | ERR10748098 | XDR-TB | lineage4.3.2.1 | None | SRR6458422 | Pre-XDR-TB | lineage2.2.1 | None | ERR3838814 | MDR-TB | lineage4.3.4.1 | None |
|---|
