Rv2043c - p.Lys48Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
2 HR-TB
132 MDR-TB
56 Pre-XDR-TB
2 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 167 |
| lineage2.2.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.1.2.1;lineage4.3.3 | 1 |
| lineage2.2.1 | 10 |
| lineage4.2.1 | 1 |
| lineage4.9 | 1 |
| lineage6.2.2 | 1 |
| lineage3.1.1 | 1 |
| lineage4 | 1 |
| lineage4.8 | 2 |
| lineage2.2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3086405 | MDR-TB | lineage4.3.3 | None | SRR12062544 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13260405 | MDR-TB | lineage4.3.3 | None | SRR19276639 | HR-TB | lineage4.3.3 | None | ERR4178198 | MDR-TB | lineage4.3.3 | None | ERR4829369 | MDR-TB | lineage4.3.3 | None | ERR2451324 | MDR-TB | lineage4.3.3 | None | ERR11591439 | MDR-TB | lineage4.3.4.2 | None | ERR4178160 | MDR-TB | lineage4.3.3 | None | ERR7911365 | MDR-TB | lineage4.3.3 | None | ERR6866137 | MDR-TB | lineage4.3.3 | None | ERR2451322 | MDR-TB | lineage4.3.3 | None | ERR3287614 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287823 | MDR-TB | lineage4.3.3 | pe | ERR3287833 | MDR-TB | lineage4.3.3 | pe | SRR28393978 | MDR-TB | lineage4.1.2.1;lineage4.3.3 | None | SRR3085352 | MDR-TB | lineage4.3.3 | None | ERR3287831 | MDR-TB | lineage4.3.3 | pe | ERR3287839 | MDR-TB | lineage4.3.3 | pe | SRR28393694 | MDR-TB | lineage4.3.3 | None | ERR3287508 | MDR-TB | lineage4.3.3 | pe | ERR3287518 | MDR-TB | lineage4.3.3 | None | ERR3287526 | MDR-TB | lineage4.3.3 | None | SRR28393384 | MDR-TB | lineage4.3.3 | None | ERR751402 | MDR-TB | lineage4.3.3 | pe | ERR4813026 | MDR-TB | lineage4.3.3 | None | ERR775365 | MDR-TB | lineage4.3.3 | pe | ERR751448 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4829247 | MDR-TB | lineage4.3.3 | None | SRR28393823 | MDR-TB | lineage4.3.3 | None | SRR28393636 | MDR-TB | lineage4.3.3 | None | SRR7131233 | MDR-TB | lineage4.3.3 | None | SRR28393677 | MDR-TB | lineage4.3.3 | None | SRR28393325 | MDR-TB | lineage4.3.3 | None | ERR4813105 | Pre-XDR-TB | lineage4.3.3 | None | ERR12117907 | Pre-XDR-TB | lineage4.3.3 | None | SRR833147 | MDR-TB | lineage2.2.1 | None | ERR2861337 | MDR-TB | lineage4.3.3 | None | SRR28393348 | MDR-TB | lineage4.3.3 | None | SRR12062541 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR12118052 | MDR-TB | lineage4.3.3 | None | SRR28394229 | MDR-TB | lineage4.3.3 | None | SRR13870380 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393783 | MDR-TB | lineage4.3.3 | None | ERR13260200 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510734 | MDR-TB | lineage4.3.3 | it | ERR3287779 | MDR-TB | lineage4.3.3 | pe | ERR3287582 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287775 | MDR-TB | lineage4.3.3 | pe | ERR3287510 | MDR-TB | lineage4.3.3 | None | SRR23086727 | MDR-TB | lineage4.3.3 | None | SRR23086705 | MDR-TB | lineage4.3.3 | None | ERR6865753 | MDR-TB | lineage4.3.3 | None | ERR4813144 | Pre-XDR-TB | lineage4.3.3 | None | SRR28394034 | MDR-TB | lineage4.3.3 | None | ERR4829744 | MDR-TB | lineage4.2.1 | None | ERR7911363 | MDR-TB | lineage4.3.3 | None | ERR4423614 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131050 | MDR-TB | lineage4.3.3 | None | ERR13284375 | XDR-TB | lineage2.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393769 | MDR-TB | lineage4.3.3 | None | SRR7131047 | MDR-TB | lineage4.3.3 | None | ERR13260673 | Pre-XDR-TB | lineage4.3.3 | None | ERR2451323 | MDR-TB | lineage4.3.3 | None | ERR13260417 | MDR-TB | lineage4.3.3 | None | SRR28393648 | MDR-TB | lineage4.3.3 | None | ERR3287865 | MDR-TB | lineage4.3.3 | pe | SRR13870399 | Pre-XDR-TB | lineage4.3.3 | None | ERR4829044 | MDR-TB | lineage4.3.3 | None | SRR3082114 | MDR-TB | lineage4.3.3 | None | ERR4812171 | MDR-TB | lineage4.3.3 | pe | SRR8791298 | Other | lineage4.9 | None | ERR4813142 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813101 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813209 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287794 | MDR-TB | lineage4.3.3 | pe | SRR28393686 | MDR-TB | lineage4.3.3 | None | ERR3287824 | MDR-TB | lineage4.3.3 | pe | SRR28393585 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393980 | MDR-TB | lineage4.3.3 | None | SRR28393604 | MDR-TB | lineage4.3.3 | None | SRR28393363 | MDR-TB | lineage4.3.3 | None | SRR28393957 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393815 | MDR-TB | lineage4.3.3 | None | ERR4813422 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751504 | MDR-TB | lineage4.3.3 | pe | ERR751444 | MDR-TB | lineage4.3.3 | pe | ERR4828832 | MDR-TB | lineage4.3.3 | None | ERR4813191 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813197 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751492 | MDR-TB | lineage4.3.3 | pe | ERR4829828 | MDR-TB | lineage4.3.3 | it | ERR4829829 | MDR-TB | lineage4.3.3 | None | ERR12117943 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393565 | MDR-TB | lineage4.3.3 | None | SRR833085 | MDR-TB | lineage2.2.1 | None | SRR13870423 | Pre-XDR-TB | lineage4.3.3 | None | SRR13870407 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02053772 | MDR-TB | lineage2.2.1 | za | SRR3085318 | MDR-TB | lineage4.3.3 | None | SRR28393939 | MDR-TB | lineage4.3.3 | None | SRR13870410 | Pre-XDR-TB | lineage4.3.3 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | SRR13870422 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510872 | MDR-TB | lineage4.3.3 | it | ERR10679989 | HR-TB | lineage6.2.2 | None | ERR9285989 | MDR-TB | lineage3.1.1 | None | SRR23086706 | MDR-TB | lineage4.3.3 | None | ERR6865704 | MDR-TB | lineage4.3.3 | None | ERR6865403 | MDR-TB | lineage4.3.3 | None | ERR4813165 | Pre-XDR-TB | lineage4.3.3 | None | ERR3132093 | MDR-TB | lineage4 | None | SRR29681251 | RR-TB | lineage4.8 | None | SRR28240060 | MDR-TB | lineage2.2.1 | None | SRR3085320 | MDR-TB | lineage4.3.3 | None | ERR13261586 | MDR-TB | lineage4.3.3 | None | SRR12062543 | Pre-XDR-TB | lineage2.2.1 | None | SRR7829586 | MDR-TB | lineage4.3.3 | None | ERR4813167 | Pre-XDR-TB | lineage4.3.3 | None | ERR13260670 | Pre-XDR-TB | lineage4.3.3 | None | SRR28394200 | Pre-XDR-TB | lineage4.3.3 | None | SRR10040422 | MDR-TB | lineage2.2.1 | None | ERR4813097 | Pre-XDR-TB | lineage4.3.3 | None | SRR29093688 | Pre-XDR-TB | lineage2.2.2 | None | SRR28393493 | MDR-TB | lineage4.3.3 | None | SRR28394182 | MDR-TB | lineage4.3.3 | None | SRR28393262 | MDR-TB | lineage4.8 | None | ERR4813166 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813196 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2510875 | MDR-TB | lineage4.3.3 | it | SRR28393696 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287817 | MDR-TB | lineage4.3.3 | pe | ERR3287836 | MDR-TB | lineage4.3.3 | pe | ERR3287849 | MDR-TB | lineage4.3.3 | pe | ERR3287860 | MDR-TB | lineage4.3.3 | pe | ERR3287882 | Pre-XDR-TB | lineage4.3.3 | pe | SRR7829588 | MDR-TB | lineage4.3.3 | None | ERR4813083 | MDR-TB | lineage4.3.3 | pe | ERR7910879 | MDR-TB | lineage4.3.3 | pe | ERR4829004 | MDR-TB | lineage4.2.2.2 | it | ERR4812980 | MDR-TB | lineage4.3.3 | pe | ERR4813060 | Pre-XDR-TB | lineage4.3.3 | None | ERR4829043 | MDR-TB | lineage4.3.3 | None | ERR751528 | MDR-TB | lineage4.3.3 | pe | ERR4829825 | MDR-TB | lineage4.3.3 | it | ERR775360 | Pre-XDR-TB | lineage4.3.3 | pe | ERR8774378 | MDR-TB | lineage2.2.1 | None | ERR4812815 | Pre-XDR-TB | lineage4.3.3 | None | SRR3085323 | MDR-TB | lineage4.3.3 | None | SRR3086403 | MDR-TB | lineage4.3.3 | None | ERR4025147 | MDR-TB | lineage4.3.3 | None | ERR2516821 | MDR-TB | lineage3 | gb | ERR2516705 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516649 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516690 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516429 | MDR-TB | lineage4.3.3 | pe | ERR2516595 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516544 | MDR-TB | lineage4.3.3 | pe | ERR2516608 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516646 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516614 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516460 | MDR-TB | lineage4.3.3 | pe | ERR4813187 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR2510793 | MDR-TB | lineage4.3.3 | it | ERR2510874 | MDR-TB | lineage4.3.3 | it | SRR6339667 | MDR-TB | lineage3.1.2 | au | ERR1034712 | MDR-TB | lineage4.3.3 | pe | ERR1034734 | MDR-TB | lineage4.3.3 | pe | ERR4828776 | MDR-TB | lineage4.3.3 | None | ERR13290919 | MDR-TB | lineage4.4.2 | None | ERR4423627 | MDR-TB | lineage4.3.3 | None | ERR12117993 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813141 | Pre-XDR-TB | lineage4.3.3 | None | SRR7829573 | MDR-TB | lineage4.3.3 | None | ERR2861340 | MDR-TB | lineage4.3.3 | None | ERR2510695 | MDR-TB | lineage4.3.3 | it | ERR2124102 | MDR-TB | lineage4.3.3 | None | SRR13870384 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287520 | MDR-TB | lineage4.3.3 | None | ERR3287834 | MDR-TB | lineage4.3.3 | pe | ERR3287506 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287710 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287816 | MDR-TB | lineage4.3.3 | pe | ERR3287764 | MDR-TB | lineage4.3.3 | pe | ERR3287525 | MDR-TB | lineage4.3.3 | None | ERR11083055 | XDR-TB | lineage2.2.1 | None | SRR22461632 | Pre-XDR-TB | lineage4.3.3 | None | ERR2861338 | MDR-TB | lineage4.3.3 | None | ERR4813610 | MDR-TB | lineage4.3.3 | None | ERR12117957 | MDR-TB | lineage4.3.3 | None | ERR6879029 | MDR-TB | lineage4.3.3 | None | ERR7911364 | MDR-TB | lineage4.3.3 | None | ERR13260677 | Pre-XDR-TB | lineage4.3.3 | None |
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