Rv2477c - c.-162A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
167 Sensitive
5 RR-TB
18 HR-TB
30 MDR-TB
28 Pre-XDR-TB
3 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 24 |
| lineage1.2.1.2.1 | 12 |
| lineage1.2.2 | 1 |
| lineage2.2.1 | 90 |
| La1.8.1 | 1 |
| lineage2.2.1.1 | 6 |
| lineage4.8 | 9 |
| lineage4.3.4.2.1 | 6 |
| lineage4.5 | 8 |
| lineage1.1.2 | 10 |
| lineage4.1.2 | 3 |
| lineage2.2.2 | 11 |
| lineage4.1.2.1 | 6 |
| La1.2.BCG | 3 |
| lineage9 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.3.3 | 6 |
| lineage1.2.2.2 | 5 |
| lineage1.1.1 | 7 |
| lineage4.1.1.3 | 6 |
| lineage3.1.1 | 2 |
| lineage4.2.2.2 | 3 |
| lineage4.4.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage1.1.1.1 | 5 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.1 | 2 |
| lineage1.1.3.1 | 3 |
| lineage4.9.1 | 1 |
| lineage4.9 | 4 |
| lineage4.4.1.1 | 4 |
| lineage4.6.1.1 | 4 |
| lineage2.2.1.1;lineage3 | 2 |
| lineage1;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1.2 | 2 |
| lineage3.1.2 | 3 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 1 |
| lineage4.2.1.1 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| La3 | 1 |
| lineage1.1.3.3 | 3 |
| lineage4.1.1 | 1 |
| lineage4.7 | 2 |
| lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage4.4 | 1 |
| lineage4.6.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.4.2 | 2 |
| lineage2.2.1;lineage4.1.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 281 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21733255 | Sensitive | lineage3 | None | SRR22251933 | Sensitive | lineage1.2.1.2.1 | None | SRR21733250 | Sensitive | lineage1.2.2 | None | SRR28119720 | MDR-TB | lineage2.2.1 | None | SRR26111993 | Other | La1.8.1 | None | SRR28868531 | Sensitive | lineage2.2.1.1 | None | SRR21733251 | Sensitive | lineage4.8 | None | SRR21732379 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR27450452 | Sensitive | lineage2.2.1 | None | SRR21733118 | Sensitive | lineage2.2.1 | None | SRR22251983 | Sensitive | lineage2.2.1 | None | SRR21733178 | Other | lineage2.2.1 | None | SRR28119755 | Sensitive | lineage2.2.1 | None | SRR22251078 | Sensitive | lineage1.2.1.2.1 | None | SRR21732553 | Sensitive | lineage4.3.4.2.1 | None | SRR22251345 | Other | lineage2.2.1 | None | SRR22249436 | Sensitive | lineage4.5 | None | SRR21733254 | Sensitive | lineage1.1.2 | None | SRR27450163 | Sensitive | lineage4.1.2 | None | SRR22251126 | Other | lineage1.2.1.2.1 | None | SRR25827464 | MDR-TB | lineage1.1.2 | None | SRR25827573 | RR-TB | lineage3 | None | SRR28119830 | MDR-TB | lineage2.2.2 | None | SRR21732427 | HR-TB | lineage2.2.1 | None | SRR28119716 | Other | lineage2.2.1 | None | SRR28119763 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732879 | Sensitive | lineage2.2.1 | None | SRR22251918 | Sensitive | lineage4.1.2.1 | None | SRR27450190 | Other | lineage2.2.1 | None | SRR27450438 | Other | lineage2.2.1 | None | ERR4827535 | MDR-TB | lineage2.2.1 | None | SRR27450062 | Sensitive | lineage3 | None | SRR27450608 | HR-TB | La1.2.BCG | None | SRR28868537 | Sensitive | lineage9 | None | SRR28858505 | HR-TB | lineage4.8 | None | SRR29096490 | Pre-XDR-TB | lineage4.8 | None | SRR25827306 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR22251647 | Sensitive | lineage4.3.3 | None | SRR22251320 | Sensitive | lineage1.2.2.2 | None | SRR28119710 | MDR-TB | lineage2.2.1 | None | SRR22251322 | Other | lineage3 | None | SRR21733357 | Sensitive | lineage1.1.1 | None | SRR21732623 | Sensitive | lineage1.1.1 | None | SRR22251333 | Sensitive | lineage3 | None | SRR27450201 | Sensitive | lineage4.1.1.3 | None | SRR21733066 | Sensitive | lineage1.1.2 | None | SRR21732979 | Sensitive | lineage3.1.1 | None | SRR28119762 | Sensitive | lineage2.2.1 | None | SRR22251357 | Sensitive | lineage1.1.2 | None | DRR474026 | Sensitive | lineage2.2.2 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827683 | Sensitive | lineage4.2.2.2 | None | SRR22251931 | Sensitive | lineage4.4.1.2 | None | SRR22251094 | Other | lineage4.1.2 | None | SRR21732904 | Sensitive | lineage3 | None | SRR25827386 | MDR-TB | lineage4.2.2 | None | SRR28868435 | Other | lineage2.2.1 | None | SRR21732686 | HR-TB | lineage4.5 | None | SRR22251355 | Sensitive | lineage1.1.1 | None | SRR21732760 | Other | lineage3 | None | SRR21732554 | Sensitive | lineage1.1.1.1 | None | SRR21733111 | Sensitive | lineage3 | None | SRR22251643 | Sensitive | lineage4.5 | None | SRR25827371 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | SRR21733243 | Sensitive | lineage4.3.4.2.1 | None | SRR28119783 | Sensitive | lineage2.2.1 | None | SRR29096787 | MDR-TB | lineage4.1.1.3 | None | SRR22251589 | Other | lineage3 | None | SRR25827589 | Sensitive | lineage2.2.1 | None | ERR4831471 | Pre-XDR-TB | lineage4.8 | pk | SRR22251258 | Sensitive | lineage2.2.1 | None | SRR21732876 | HR-TB | lineage3 | None | SRR25827433 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR22251831 | Sensitive | lineage1.1.1 | None | SRR27450599 | Sensitive | lineage2.2.1 | None | SRR21732917 | Sensitive | lineage4.1 | None | SRR21732807 | Sensitive | lineage2.2.1.1 | None | SRR28868892 | Sensitive | lineage1.1.3.1 | None | SRR21732620 | Sensitive | lineage4.9.1 | None | SRR28860000 | Sensitive | lineage2.2.1 | None | SRR22251310 | Sensitive | lineage2.2.1 | None | SRR25827392 | Sensitive | lineage4.9 | None | SRR27107255 | MDR-TB | lineage4.4.1.1 | None | SRR17657998 | Sensitive | lineage4.6.1.1 | None | SRR25827389 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | SRR27069431 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827704 | XDR-TB | lineage2.2.1 | None | SRR21732511 | Sensitive | lineage2.2.1 | None | SRR21732385 | Sensitive | lineage2.2.1 | None | SRR25827587 | RR-TB | lineage4.8 | None | SRR28045995 | Sensitive | lineage3 | None | SRR26112823 | HR-TB | lineage4.1 | None | SRR25827484 | Pre-XDR-TB | lineage1;lineage2.2.1;lineage3;lineage4 | None | SRR27450467 | Sensitive | lineage2.2.1 | None | SRR27450642 | Sensitive | lineage2.2.1 | None | SRR27449988 | Sensitive | lineage2.2.1 | None | SRR28119826 | Other | lineage2.2.1 | None | SRR28868661 | Other | lineage1.2.1.2.1 | None | SRR25827417 | Pre-XDR-TB | lineage2.2.1;lineage4.9 | None | SRR27450262 | Sensitive | lineage3.1.1 | None | SRR28119722 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351340 | HR-TB | lineage3 | None | SRR14164390 | HR-TB | lineage4.3.3 | None | SRR22251925 | Sensitive | lineage3 | None | SRR25460166 | Sensitive | lineage4.3.3 | None | SRR21732875 | Other | lineage2.2.1 | None | SRR21733026 | Sensitive | lineage4.3.3 | None | SRR22251679 | Sensitive | lineage2.2.1.2 | None | SRR21732641 | Sensitive | lineage2.2.2 | None | SRR16088411 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733379 | HR-TB | lineage1.2.1.2.1 | None | SRR27449966 | Other | La1.2.BCG | None | SRR21733246 | RR-TB | lineage3.1.2 | None | SRR25827345 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | SRR16088365 | Sensitive | lineage4.2.1.1 | None | SRR27107240 | MDR-TB | lineage4.3.3 | None | SRR25827875 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | SRR21733245 | Other | lineage2.2.1 | None | SRR28858716 | Sensitive | La3 | None | ERR4827725 | Sensitive | lineage2.2.1 | None | SRR27450389 | Sensitive | lineage1.1.3.3 | None | SRR22251321 | Sensitive | lineage2.2.1 | None | SRR28119806 | Sensitive | lineage2.2.1 | None | SRR21733097 | Sensitive | lineage2.2.1 | None | SRR22251086 | Sensitive | lineage4.1.1 | None | ERR11798530 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733098 | Sensitive | lineage4.1.1.3 | None | SRR21733059 | Sensitive | lineage4.7 | None | SRR21733051 | Other | lineage3 | None | SRR16087926 | Other | lineage4.1.2.1 | None | SRR27449968 | Sensitive | lineage4.5 | None | SRR28868807 | Sensitive | lineage1.1.3.1;lineage2.2.1 | None | SRR27450631 | Other | lineage2.2.1 | None | SRR16088572 | MDR-TB | lineage2.2.1 | None | SRR28119759 | Pre-XDR-TB | lineage2.2.1 | None | SRR28868635 | Sensitive | lineage1.2.2.2 | None | SRR28119828 | MDR-TB | lineage4.5 | None | SRR28119815 | Sensitive | lineage2.2.1 | None | SRR22251092 | Sensitive | lineage2.2.1 | None | SRR29093125 | Sensitive | lineage4.4.1.1 | None | SRR27450196 | Sensitive | lineage1.1.2 | None | SRR25827603 | Other | lineage3 | None | SRR22048442 | HR-TB | lineage4.1.2.1 | None | SRR25827832 | Sensitive | lineage3 | None | SRR28868726 | Sensitive | lineage4.3.4.2.1 | None | SRR22251632 | Sensitive | lineage4.4 | None | SRR21732179 | Sensitive | lineage1.1.2 | None | SRR22249876 | Sensitive | lineage2.2.1.2 | None | SRR22251627 | HR-TB | lineage1.2.2.2 | None | SRR25827528 | MDR-TB | lineage2.2.1.1 | None | SRR27107292 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119835 | MDR-TB | lineage2.2.1 | None | SRR21733223 | Other | lineage1.1.1.1 | None | SRR16088369 | Other | lineage4.8 | None | SRR21733112 | Other | lineage3 | None | SRR27450041 | Sensitive | lineage2.2.1 | None | SRR27450638 | Sensitive | lineage2.2.1 | None | SRR22251943 | Sensitive | lineage1.2.1.2.1 | None | SRR21733073 | Sensitive | lineage4.7 | None | SRR21733091 | Sensitive | lineage3 | None | SRR27450538 | Sensitive | lineage4.3.4.2.1 | None | SRR22251923 | Sensitive | lineage1.1.3.3 | None | SRR25827377 | Pre-XDR-TB | lineage2.2.1 | None | SRR26331660 | RR-TB | lineage4.4.1.1 | None | SRR28868567 | Sensitive | lineage3 | None | SRR21733095 | Other | lineage2.2.1 | None | SRR28119719 | MDR-TB | lineage2.2.2 | None | SRR21733261 | Sensitive | lineage1.2.2.2 | None | SRR28119809 | Sensitive | lineage2.2.1 | None | SRR25827571 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827871 | XDR-TB | lineage2.2.1 | None | SRR22251944 | Sensitive | lineage1.1.2 | None | SRR22251361 | Sensitive | lineage2.2.1 | None | SRR21733100 | Sensitive | lineage2.2.1 | None | SRR21733380 | Sensitive | lineage3 | None | SRR21732202 | HR-TB | lineage1.1.3.1 | None | SRR29093517 | MDR-TB | lineage4.6.1 | None | SRR28119709 | MDR-TB | lineage2.2.1 | None | SRR28868722 | Sensitive | lineage4.6.1.1 | None | SRR16088175 | Sensitive | lineage2.2.1 | None | SRR21732877 | Sensitive | lineage1.2.1.2.1 | None | SRR28119816 | HR-TB | lineage2.2.1 | None | SRR28119837 | HR-TB | lineage2.2.1 | None | SRR21733089 | Sensitive | lineage4.5 | None | SRR29017579 | MDR-TB | lineage1.1.2 | None | SRR21732465 | Sensitive | lineage1.1.1 | None | SRR27450224 | Sensitive | lineage4.9 | None | SRR21732550 | Sensitive | lineage4.9 | None | SRR25827711 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | SRR21732801 | Sensitive | lineage1.1.3.3 | None | SRR21733322 | Sensitive | lineage4.4.1.1 | None | SRR22251638 | Sensitive | lineage2.2.1 | None | SRR27450231 | Sensitive | lineage4.9 | None | SRR22251833 | Sensitive | lineage3 | None | SRR28385881 | MDR-TB | lineage2.2.2 | None | SRR22251645 | Other | lineage1.2.1.2.1 | None | SRR21732305 | Sensitive | lineage1.2.1.2 | None | SRR21732687 | Sensitive | lineage1.1.1.1 | None | SRR28385878 | MDR-TB | lineage2.2.2 | None | SRR27450060 | Sensitive | lineage3.1.2.1 | None | SRR28119758 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119712 | MDR-TB | lineage2.2.1 | None | SRR28119757 | Sensitive | lineage2.2.1 | None | SRR21733099 | Sensitive | lineage1.1.1 | None | SRR22251136 | Sensitive | lineage2.2.1 | None | ERR4831153 | Sensitive | lineage4.2.2.2 | None | SRR28119818 | MDR-TB | lineage2.2.2 | None | ERR11081071 | Sensitive | lineage4.3.3 | None | SRR21732508 | Sensitive | lineage2.2.1.1 | None | SRR22251626 | Sensitive | lineage4.1.2.1 | None | SRR22251641 | Other | lineage4.1.2 | None | SRR25827853 | Sensitive | lineage3.1.2 | None | SRR22251132 | Sensitive | lineage1.1.1.1 | None | SRR21732196 | Sensitive | lineage4.1.1.3 | None | SRR27450471 | HR-TB | La1.2.BCG | None | SRR22251954 | Sensitive | lineage1.1.1 | None | SRR27450195 | Sensitive | lineage3 | None | SRR27450445 | Other | lineage2.2.1 | None | ERR10465951 | Sensitive | lineage4.2.2.1 | None | SRR26558620 | MDR-TB | lineage2.2.1 | None | SRR28119836 | Sensitive | lineage2.2.1.1 | None | SRR25827677 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732868 | Sensitive | lineage4.8 | None | SRR16088520 | Sensitive | lineage2.2.1 | None | SRR28119808 | Sensitive | lineage2.2.1 | None | SRR27450465 | Other | lineage2.2.1 | None | SRR22251664 | MDR-TB | lineage2.2.1 | None | SRR28868575 | Sensitive | lineage4.5 | None | SRR27450561 | Sensitive | lineage1.2.2.2 | None | SRR28119784 | Sensitive | lineage2.2.1 | None | SRR28119831 | RR-TB | lineage4.4.2 | None | SRR22251862 | Sensitive | lineage4.1.2.1 | None | SRR28119721 | MDR-TB | lineage2.2.1 | None | SRR27450629 | Sensitive | lineage4.4.2 | None | SRR28119725 | HR-TB | lineage2.2.2 | None | SRR22251323 | Sensitive | lineage4.1.1.3 | None | SRR28119748 | MDR-TB | lineage2.2.2 | None | SRR22251836 | Sensitive | lineage2.2.1 | None | SRR28868800 | Sensitive | lineage1.2.1.2.1 | None | SRR21732372 | Sensitive | lineage1.1.2 | None | SRR27450218 | Sensitive | lineage4.8 | None | SRR28119715 | MDR-TB | lineage2.2.1 | None | SRR25827290 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088363 | Sensitive | lineage4.2.1.1 | None | SRR28868802 | Sensitive | lineage3.1.2 | None | SRR21732685 | Sensitive | lineage1.2.1.2.1 | None | SRR27450245 | Sensitive | lineage4.3.4.2.1 | None | SRR28119745 | MDR-TB | lineage2.2.2 | None | SRR28868504 | Sensitive | lineage4.8 | None | SRR28868576 | Sensitive | lineage1.1.1.1 | None | SRR29093940 | Sensitive | lineage4.3.4.2.1 | None | SRR22251919 | Sensitive | lineage1.2.1.2.1 | None | SRR28868632 | Sensitive | lineage1.1.2 | None | SRR29385389 | HR-TB | lineage2.2.1 | None | SRR27450640 | Sensitive | lineage2.2.1 | None | SRR25827468 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.1 | None | SRR27450344 | Sensitive | lineage4.2.2.2 | None | SRR28119814 | Sensitive | lineage2.2.1 | None | SRR21732880 | Sensitive | lineage3 | None | SRR27449971 | Sensitive | lineage2.2.1 | None | SRR28868536 | Sensitive | lineage4.3.2 | None | SRR27069379 | MDR-TB | lineage2.2.1 | None | SRR27069384 | MDR-TB | lineage2.2.1 | None | SRR27450630 | Sensitive | lineage2.2.1 | None | SRR22251358 | Sensitive | lineage1.2.1.2.1 | None | ERR4797689 | Pre-XDR-TB | lineage2.2.1 | in | SRR28868572 | Sensitive | lineage3 | None | SRR26112424 | Sensitive | lineage1.1.3.1 | None | SRR10315642 | MDR-TB | lineage4.4.1.1.1 | None | SRR16915702 | Sensitive | lineage4.1.2.1 | None | SRR22251930 | Sensitive | lineage4.5 | None | SRR28119834 | HR-TB | lineage2.2.2 | None | SRR22251639 | Sensitive | lineage2.2.1 | None | SRR17657997 | Sensitive | lineage4.6.1.1 | None | SRR17657999 | Sensitive | lineage4.6.1.1 | None | SRR25827527 | Pre-XDR-TB | lineage2.2.1;lineage4.2.2.2 | None | SRR25827788 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732552 | Sensitive | lineage4.1.1.3 | None | SRR28119744 | Sensitive | lineage2.2.1 | None | SRR28351341 | Other | lineage4.1.1.1 | None | SRR28119821 | Sensitive | lineage2.2.1 | None |
|---|
