Rv3794 - c.-15C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
6 RR-TB
10 HR-TB
110 MDR-TB
91 Pre-XDR-TB
14 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 16 |
| lineage1.2.2.2 | 12 |
| lineage4.6.1.2 | 7 |
| lineage4.1.2.1 | 11 |
| lineage2.2.1 | 60 |
| lineage4.2.1 | 18 |
| lineage4.3.4.2 | 2 |
| lineage4.3.1 | 2 |
| lineage2.2.1.1 | 14 |
| lineage3.1.2 | 3 |
| lineage4.4.1.1 | 15 |
| lineage4.2.2.2 | 3 |
| lineage4.1.1.1 | 3 |
| lineage4.1.1.3 | 7 |
| lineage4.3.4.1 | 8 |
| lineage6.2.2 | 4 |
| lineage4.3.3 | 6 |
| lineage5.1.2 | 1 |
| lineage2.2.2 | 8 |
| lineage4 | 2 |
| lineage3;lineage4.4.1.2 | 1 |
| lineage5.3 | 3 |
| lineage2.1 | 3 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage2.2.1.1;lineage4.8 | 1 |
| lineage4.4.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2;lineage4.2.1 | 2 |
| 1 | |
| lineage4.2.2.1 | 7 |
| lineage2.2.1.2 | 2 |
| lineage4.3.4 | 1 |
| lineage5.1.1 | 1 |
| lineage3.1.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 231 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR688037 | Pre-XDR-TB | lineage3 | None | ERR13276244 | Pre-XDR-TB | lineage3 | None | SRR29017060 | XDR-TB | lineage1.2.2.2 | None | ERR6359000 | MDR-TB | lineage4.6.1.2 | None | SRR29274084 | MDR-TB | lineage4.1.2.1 | None | SRR29289310 | XDR-TB | lineage3 | None | SRR25515641 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553582 | RR-TB | lineage1.2.2.2 | None | SRR23310930 | Pre-XDR-TB | lineage4.2.1 | None | SRR29230772 | MDR-TB | lineage4.3.4.2 | None | SRR29289226 | XDR-TB | lineage3 | None | ERR551838 | MDR-TB | lineage4.3.1 | None | ERR13288872 | MDR-TB | lineage2.2.1.1 | None | ERR4799086 | MDR-TB | lineage3.1.2 | in | SRR29274007 | MDR-TB | lineage4.4.1.1 | None | SRR23938699 | HR-TB | lineage2.2.1 | None | ERR4799336 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR551432 | MDR-TB | lineage2.2.1 | None | ERR4872249 | MDR-TB | lineage4.1.1.1 | None | ERR4827669 | MDR-TB | lineage2.2.1 | None | SRR28339304 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576579 | MDR-TB | lineage2.2.1 | None | SRR28046246 | Pre-XDR-TB | lineage3 | None | SRR10040409 | Pre-XDR-TB | lineage2.2.1 | None | ERR751650 | Pre-XDR-TB | lineage2.2.1 | th | ERR1034603 | Pre-XDR-TB | lineage4.1.1.3 | pk | ERR7910905 | MDR-TB | lineage4.2.1 | md | ERR9907794 | MDR-TB | lineage4.3.4.1 | None | ERR2307370 | Pre-XDR-TB | lineage2.2.1 | None | ERR553000 | MDR-TB | lineage6.2.2 | None | ERR227990 | HR-TB | lineage4.3.3 | ru | SAMEA2534809 | MDR-TB | lineage2.2.1 | de | SRR18715441 | MDR-TB | lineage5.1.2 | None | SRR6824623 | MDR-TB | lineage2.2.2 | cn | SRR14807677 | HR-TB | lineage4.1.2.1 | None | SRR15368867 | MDR-TB | lineage2.2.1 | None | SRR28119720 | MDR-TB | lineage2.2.1 | None | SRR22424755 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341244 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR28393620 | MDR-TB | lineage4 | None | SRR29017362 | Pre-XDR-TB | lineage4.3.3 | None | ERR9907797 | MDR-TB | lineage4.3.4.1 | None | SRR5065371 | Pre-XDR-TB | lineage2.2.2 | vn | SRR27107235 | HR-TB | lineage4.1.2.1 | None | SRR28351324 | Pre-XDR-TB | lineage3;lineage4.4.1.2 | None | ERR4827994 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865999 | MDR-TB | lineage2.2.1 | None | SRR3105804 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR10379933 | Pre-XDR-TB | lineage4.2.1 | None | ERR11068991 | MDR-TB | lineage5.3 | None | ERR11798677 | Pre-XDR-TB | lineage4.2.1 | None | ERR9119641 | MDR-TB | lineage4.1.1.1 | None | SRR14801609 | HR-TB | lineage4.1.2.1 | None | SRR14802228 | MDR-TB | lineage4.2.1 | None | ERR10680021 | MDR-TB | lineage6.2.2 | None | ERR6359129 | MDR-TB | lineage4.6.1.2 | None | ERR6359103 | MDR-TB | lineage4.6.1.2 | None | SRR29772732 | MDR-TB | lineage3 | None | SRR13232615 | MDR-TB | lineage2.2.1 | None | SRR25827401 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291051 | Pre-XDR-TB | lineage2.1 | None | ERR4800671 | HR-TB | lineage3 | None | SRR14807612 | HR-TB | lineage4.1.2.1 | None | ERR551432_ERR551431 | MDR-TB | lineage2.2.1 | None | ERR688035 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29017651 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28393346 | MDR-TB | lineage4.1.1.1 | None | SRR28351429 | Pre-XDR-TB | lineage4.2.1 | None | ERR4797852 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR25534597 | Pre-XDR-TB | lineage2.2.1 | None | SRR28339303 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827364 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR25534517 | Pre-XDR-TB | lineage2.2.1 | None | SRR19241813 | MDR-TB | lineage4.1.2.1 | None | ERR9285998 | MDR-TB | lineage4.4.1.1 | None | SRR22175230 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11662213 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510478 | Pre-XDR-TB | lineage3 | pk | SRR23310926 | Pre-XDR-TB | lineage4.2.1 | None | ERR13288865 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR9992794 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798565 | MDR-TB | lineage3.1.2 | in | ERR4800290 | XDR-TB | lineage2.2.1.1;lineage4.8 | in | ERR13292574 | MDR-TB | lineage4.2.1 | None | SRR13423613 | Pre-XDR-TB | lineage4.4.2 | None | ERR13288867 | MDR-TB | lineage4.2.1 | None | ERR4797028 | Pre-XDR-TB | lineage1.1.2 | in | SRR22175240 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4800437 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR551200 | MDR-TB | lineage4.3.1 | None | SRR28351393 | Pre-XDR-TB | lineage4.2.1 | None | ERR4809028 | MDR-TB | lineage4.2.1 | za | ERR4809241 | MDR-TB | lineage4.1.2;lineage4.2.1 | za | ERR2706995 | MDR-TB | lineage4.3.4.2 | cd | ERR2707084 | MDR-TB | lineage4.6.1.2 | cd | ERR4811536 | Pre-XDR-TB | lineage2.2.1 | cn | ERR10762351 | MDR-TB | lineage4.2.1 | None | ERR4553577 | RR-TB | lineage1.2.2.2 | None | ERR4553882 | RR-TB | None | SAMEA2533937 | MDR-TB | lineage2.2.1 | uz | SRR2100392 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR2041766 | MDR-TB | lineage4.2.2.1 | rs | ERR2041718 | Pre-XDR-TB | lineage4.2.2.1 | rs | ERR2041749 | MDR-TB | lineage4.2.2.1 | rs | ERR2199914 | Pre-XDR-TB | lineage4.2.2.1 | rs | ERR2041759 | MDR-TB | lineage4.2.2.1 | rs | ERR2200093 | Pre-XDR-TB | lineage4.2.2.1 | rs | ERR2041748 | Pre-XDR-TB | lineage4.2.2.1 | rs | SRR6824499 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824435 | MDR-TB | lineage2.2.1.1 | cn | SRR6824482 | Pre-XDR-TB | lineage2.2.2 | cn | SRR23311073 | MDR-TB | lineage4.2.1 | None | SRR29017606 | MDR-TB | lineage1.2.2.2 | None | SRR29231725 | MDR-TB | lineage4.6.1.2 | None | SRR23310853 | Pre-XDR-TB | lineage4.2.1 | None | SRR28706703 | MDR-TB | lineage2.2.1 | None | SRR29096366 | MDR-TB | lineage4.3.3 | None | ERR5866574 | MDR-TB | lineage2.2.1 | None | ERR11798678 | Pre-XDR-TB | lineage4.2.1 | None | SRR1173572 | MDR-TB | lineage3 | None | SRR28046123 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043261 | MDR-TB | lineage2.2.1.1 | None | ERR2653159 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR11043737 | MDR-TB | lineage2.2.1 | None | ERR9992798 | HR-TB | lineage2.2.2 | None | DRR130063 | Pre-XDR-TB | lineage2.2.1 | None | ERR9285997 | MDR-TB | lineage4.4.1.1 | None | ERR114421 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR13284183 | MDR-TB | lineage5.3 | None | ERR3132077 | HR-TB | lineage2.2.2 | None | SRR6930905 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261387 | Pre-XDR-TB | lineage2.2.1 | None | SRR25206917 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827298 | XDR-TB | lineage2.2.1 | None | ERR552670 | MDR-TB | lineage2.2.1 | None | ERR4553792 | RR-TB | lineage1.2.2.2 | None | SRR15316367 | MDR-TB | lineage2.2.1 | None | ERR405205 | MDR-TB | lineage4.4.1.1 | None | SRR5153810 | MDR-TB | lineage4.3.3 | None | SRR18213771 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR29017160 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR1654682 | MDR-TB | lineage4.6.1.2 | None | ERR405207 | MDR-TB | lineage4.4.1.1 | None | SRR29016980 | MDR-TB | lineage4.3.4.1 | None | SRR29094371 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR20969770 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276934 | MDR-TB | lineage2.2.1 | None | ERR13258500 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802045 | HR-TB | lineage4.1.2.1 | None | SRR25207209 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR29093653 | MDR-TB | lineage4.3.3 | None | SRR29016784 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR25827816 | XDR-TB | lineage3.1.2 | None | ERR5866573 | MDR-TB | lineage2.2.1 | None | ERR7975640 | MDR-TB | lineage4.2.1 | None | ERR9286028 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR18054793 | Pre-XDR-TB | lineage2.2.2 | None | SRR22048323 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6511622 | MDR-TB | lineage4.3.4.1 | None | SRR29289421 | XDR-TB | lineage3 | None | SRR29289127 | XDR-TB | lineage3 | None | SRR29289216 | XDR-TB | lineage3 | None | ERR9907694 | MDR-TB | lineage4.3.4.1 | None | SRR29289241 | XDR-TB | lineage3 | None | ERR2653099 | Pre-XDR-TB | lineage4.3.4 | None | ERR552667 | MDR-TB | lineage2.2.1 | None | ERR5865998 | MDR-TB | lineage2.2.1 | None | ERR13284936 | MDR-TB | lineage2.2.1 | None | SRR29081570 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR21277576 | MDR-TB | lineage2.2.1 | None | ERR4799163 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR11662413 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799380 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR3743434 | Pre-XDR-TB | lineage4.2.1 | None | ERR13290724 | MDR-TB | lineage2.1 | None | SRR29016885 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR13261373 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207165 | Pre-XDR-TB | lineage2.2.1 | None | ERR9286005 | MDR-TB | lineage4.4.1.1 | None | SAMN02628506 | MDR-TB | lineage3 | ir | ERR9286063 | MDR-TB | lineage4.4.1.1 | None | ERR2864260 | MDR-TB | lineage4.3.4.1 | pt | ERR4811370 | Pre-XDR-TB | lineage2.2.1.2 | cn | ERR4809254 | MDR-TB | lineage2.2.1.1 | za | ERR10680166 | MDR-TB | lineage6.2.2 | None | SRR28467072 | MDR-TB | lineage2.2.1 | None | ERR4831466 | MDR-TB | lineage4.1.1.3 | None | SRR28706570 | MDR-TB | lineage4.3.3 | None | SRR22424822 | Pre-XDR-TB | lineage2.2.1 | None | ERR1199098 | MDR-TB | lineage4.6.1.2 | cd | SRR7341668 | MDR-TB | lineage4.4.1.1 | ro | ERR3170440 | RR-TB | lineage5.1.1 | gh | ERR2517045 | Pre-XDR-TB | lineage4.4.1.1 | gb | ERR2516599 | MDR-TB | lineage4 | pe | ERR2513352 | Pre-XDR-TB | lineage4.4.1.1 | gb | ERR2515868 | MDR-TB | lineage4.1.1.3 | za | SRR29093512 | MDR-TB | lineage4.1.1.3 | None | SRR12072596 | Pre-XDR-TB | lineage2.2.1 | None | ERR552668 | MDR-TB | lineage2.2.1 | None | SRR8380043 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680203 | MDR-TB | lineage6.2.2 | None | ERR4797902 | XDR-TB | lineage2.2.1.1 | in | ERR4799245 | XDR-TB | lineage2.2.1.1 | in | ERR4799436 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800353 | XDR-TB | lineage2.2.1.1 | in | ERR4822363 | Pre-XDR-TB | lineage2.2.1 | None | SRR8366603 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917684 | Pre-XDR-TB | lineage2.2.1 | by | ERR4809240 | MDR-TB | lineage2.2.1;lineage4.2.1 | za | SRR21747071 | MDR-TB | lineage2.1 | None | ERR552666 | MDR-TB | lineage2.2.1 | None | SRR14782339 | Pre-XDR-TB | lineage4.2.1 | None | ERR10680215 | MDR-TB | lineage4.1.2.1 | None | ERR3639810 | MDR-TB | lineage5.3 | None | ERR5979434 | MDR-TB | lineage3.1.1 | None | DRR454969 | MDR-TB | lineage2.2.1.1 | None | ERR9286003 | MDR-TB | lineage4.4.1.1 | None | SRR4423177 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR13288866 | MDR-TB | lineage4.1.2;lineage4.2.1 | None | ERR1034605 | Pre-XDR-TB | lineage3 | pk | ERR4553789 | RR-TB | lineage1.2.2.2 | None | ERR552671 | MDR-TB | lineage2.2.1 | None | SRR28239932 | MDR-TB | lineage2.2.1 | None | SRR29274000 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR405195 | MDR-TB | lineage3.1.1 | None | ERR11043054 | Pre-XDR-TB | lineage3 | None | ERR551431 | MDR-TB | lineage2.2.1 | None | SRR29017647 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR10680204 | MDR-TB | lineage4.1.2.1 | None | ERR13284048 | MDR-TB | lineage2.2.1.1 | None |
|---|
