Rv3794 - c.-8C>T


Drug resistance types
1 Sensitive 2 RR-TB 9 HR-TB 148 MDR-TB 71 Pre-XDR-TB 5 XDR-TB 0 Other
lineage Counts
lineage Count
lineage4.2.1 27
lineage4.2.2.1 22
lineage6.3.3 1
lineage2.2.1 75
lineage3.1.1 8
lineage3.1.2.1 1
lineage4.3.4.2 6
lineage1.2.1.2 1
lineage4.3.4 1
lineage4.6.1.2 9
lineage2.2.2 5
lineage4.3.3 11
lineage4.1.1.3 11
lineage4.1.2.1 8
lineage2.2.1;lineage4.3.3 1
lineage4.3 1
lineage3 16
lineage4.9 1
lineage4.3.4.2.1 4
lineage4.3.4.1 1
lineage2.2.1.1 2
lineage4.4.1.1 4
lineage4.4.2 1
lineage1.1.2;lineage2.2.1;lineage3.1 1
lineage4.5 2
lineage1.2.2.1;lineage2.2.1.1 1
lineage2.2.1.2 1
lineage3.1.1;lineage4 1
lineage4.3.2 4
lineage2.2.1;lineage4.2.1 1
lineage4.6.3 1
1
lineage5.2 2
lineage4.1.1 1
lineage4.3.2.1 1
lineage4.4.1 1
lineage4.2.2.2 1
spoligotype Counts
spoligotype Count
None 236
Geographic prevalence
Country level data for this variant is available for 76 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR16088478 MDR-TB lineage4.2.1 None
ERR868538 MDR-TB lineage4.2.2.1 None
ERR10680188 MDR-TB lineage6.3.3 None
ERR2516775 MDR-TB lineage2.2.1 gb
ERR4829094 Pre-XDR-TB lineage3.1.1 dj
SRR998857 Pre-XDR-TB lineage4.2.1 None
SRR12420679 MDR-TB lineage2.2.1 None
ERR4796605 MDR-TB lineage3.1.2.1 in
ERR6362477 MDR-TB lineage2.2.1 None
SRR6353871 MDR-TB lineage2.2.1 None
ERR2041709 MDR-TB lineage4.2.2.1 rs
ERR2307748 Pre-XDR-TB lineage2.2.1 None
SRR15014781 MDR-TB lineage4.3.4.2 None
ERR3148194 MDR-TB lineage1.2.1.2 mx
SRR21887668 Pre-XDR-TB lineage2.2.1 None
SRR11972430 MDR-TB lineage2.2.1 None
ERR9907706 MDR-TB lineage4.3.4 None
SRR3743408 Pre-XDR-TB lineage4.2.1 None
ERR6359020 MDR-TB lineage4.6.1.2 None
ERR8665827 Pre-XDR-TB lineage2.2.1 None
SRR25207353 Pre-XDR-TB lineage2.2.2 None
ERR2653083 Pre-XDR-TB lineage4.3.3 None
ERR1873446 Pre-XDR-TB lineage4.1.1.3 None
SRR6832296 HR-TB lineage4.2.1 None
ERR2515475 Pre-XDR-TB lineage4.1.1.3 za
ERR3287608 HR-TB lineage4.1.2.1 None
ERR2041796 MDR-TB lineage4.2.2.1 rs
ERR2516698 Pre-XDR-TB lineage4.1.2.1 pe
ERR1873550 Pre-XDR-TB lineage4.1.1.3 za
ERR10748424 MDR-TB lineage4.1.1.3 None
ERR2041753 MDR-TB lineage4.2.2.1 rs
ERR4797545 Pre-XDR-TB lineage2.2.1 in
ERR983228 MDR-TB lineage2.2.1 None
ERR550838_ERR550837 MDR-TB lineage2.2.1 None
ERR2516769 MDR-TB lineage2.2.1 gb
ERR9286000 MDR-TB lineage3.1.1 None
ERR1023303 MDR-TB lineage3.1.1 None
SRR11348147 MDR-TB lineage4.3.4.2 None
ERR2510711 Pre-XDR-TB lineage4.2.1 it
SRR24255997 MDR-TB lineage4.3.3 None
ERR108512 MDR-TB lineage2.2.1;lineage4.3.3 ru
ERR4799543 Pre-XDR-TB lineage4.3 None
ERR5865899 MDR-TB lineage2.2.1 None
SAMN02584589 MDR-TB lineage4.2.1 md
ERR2041734 MDR-TB lineage4.2.2.1 rs
ERR9992753 XDR-TB lineage4.1.1.3 None
SRR28393334 MDR-TB lineage4.1.2.1 None
SRR28498580 Pre-XDR-TB lineage4.2.1 None
SRR28351392 MDR-TB lineage4.3.3 None
SRR28393386 MDR-TB lineage4.1.2.1 None
ERR2510451 Pre-XDR-TB lineage3 pk
ERR2510524 MDR-TB lineage3 pk
ERR551727 MDR-TB lineage2.2.1 None
ERR4810851 Pre-XDR-TB lineage2.2.2 cn
ERR4828852 MDR-TB lineage4.3.3 None
ERR688048 Pre-XDR-TB lineage3 None
ERR11067760 Pre-XDR-TB lineage2.2.1 None
ERR2041798 MDR-TB lineage4.2.2.1 rs
ERR2041689 MDR-TB lineage4.2.2.1 rs
ERR987772 HR-TB lineage4.9 None
ERR7737653 MDR-TB lineage3 None
SAMEA2533511 MDR-TB lineage2.2.1 uz
ERR10762467 Pre-XDR-TB lineage4.2.1 None
SRR3724799 MDR-TB lineage4.3.4.2.1 cd
SRR1169022 Pre-XDR-TB lineage4.2.1 None
SRR1169011 MDR-TB lineage4.2.1 None
ERR553107 MDR-TB lineage2.2.1 in
SAMN02584611 MDR-TB lineage4.2.1 md
ERR9119799 MDR-TB lineage2.2.1 None
ERR5865792 MDR-TB lineage4.3.3 None
SRR15368978 MDR-TB lineage2.2.1 None
ERR9120010 MDR-TB lineage2.2.1 None
ERR11138608 Pre-XDR-TB lineage2.2.1 None
ERR4799873 Pre-XDR-TB lineage2.2.1 in
ERR2041737 MDR-TB lineage4.2.2.1 None
ERR4813878 MDR-TB lineage4.3.4.1 br
ERR688047 Pre-XDR-TB lineage3 None
ERR11044426 HR-TB lineage4.3.3 None
ERR8774435 MDR-TB lineage4.3.4.2.1 None
ERR10748202 MDR-TB lineage2.2.1.1 None
ERR6358734 MDR-TB lineage4.6.1.2 None
ERR4811334 Pre-XDR-TB lineage2.2.1 cn
SRR1169083 MDR-TB lineage4.2.1 None
ERR4797326 MDR-TB lineage2.2.1 in
ERR9119717 MDR-TB lineage2.2.1 None
ERR6358931 MDR-TB lineage4.6.1.2 None
SRR25207281 Pre-XDR-TB lineage2.2.1 None
ERR550896 MDR-TB lineage4.4.1.1 None
ERR2041790 MDR-TB lineage4.2.2.1 None
SRR7645866 Pre-XDR-TB lineage4.2.1 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR25827550 XDR-TB lineage1.1.2;lineage2.2.1;lineage3.1 None
SRR10040148 MDR-TB lineage4.5 None
SRR14801652 HR-TB lineage4.3.3 None
SRR21277853 MDR-TB lineage2.2.1 None
ERR1952141 Pre-XDR-TB lineage2.2.1 ie
SRR25207198 Pre-XDR-TB lineage2.2.2 None
SRR1169165 MDR-TB lineage4.2.1 None
ERR2041777 MDR-TB lineage4.2.2.1 rs
SRR1166315 MDR-TB lineage4.2.1 None
ERR10748452 MDR-TB lineage2.2.1 None
ERR11068339 Pre-XDR-TB lineage2.2.1 None
ERR2600530 MDR-TB lineage2.2.1 None
ERR6358770 MDR-TB lineage4.6.1.2 None
SRR21887691 Pre-XDR-TB lineage2.2.1 None
ERR2041738 MDR-TB lineage4.2.2.1 rs
SAMEA2533548 MDR-TB lineage4.4.1.1 uz
SRR22251593 MDR-TB lineage2.2.1 None
SRR8651556 Pre-XDR-TB lineage2.2.1 cn
ERR5987436 MDR-TB lineage2.2.1 None
ERR2516405 Pre-XDR-TB lineage4.1.2.1 pe
ERR2707190 MDR-TB lineage4.3.4.2.1 cd
ERR10748243 MDR-TB lineage1.2.2.1;lineage2.2.1.1 None
ERR11082810 MDR-TB lineage4.2.2.1 None
SRR21276917 MDR-TB lineage2.2.1 None
SRR16087920 MDR-TB lineage4.3.3 None
SRR15014681 MDR-TB lineage4.3.4.2 None
ERR158606 MDR-TB lineage2.2.1 gb
ERR6359049 MDR-TB lineage4.6.1.2 None
ERR9806988 Pre-XDR-TB lineage4.1.1.3 None
SRR11348141 MDR-TB lineage4.3.4.2 None
ERR11069059 Pre-XDR-TB lineage2.2.1.2 None
ERR5865791 MDR-TB lineage4.3.3 None
SRR1144734 MDR-TB lineage3.1.1;lineage4 None
SAMEA2534150 MDR-TB lineage2.2.1 uz
SRR11348143 MDR-TB lineage4.3.4.2 None
ERR1035277 Pre-XDR-TB lineage4.3.2 br
SRR6831901 Pre-XDR-TB lineage2.2.1 None
ERR2041746 MDR-TB lineage4.2.2.1 rs
ERR3794362 MDR-TB lineage2.2.1;lineage4.2.1 None
SRR21690032 HR-TB lineage4.3.3 None
SRR27332324 MDR-TB lineage4.6.3 None
SRR28394029 MDR-TB lineage4.1.2.1 None
ERR4553852 Sensitive None
ERR1034587 Pre-XDR-TB lineage3 pk
ERR1034616 Pre-XDR-TB lineage3 pk
ERR1034615 Pre-XDR-TB lineage3 pk
SRR21276941 Pre-XDR-TB lineage2.2.1 None
ERR2706914 MDR-TB lineage5.2 cd
SRR6256976 Pre-XDR-TB lineage4.2.1 ru
ERR551726 MDR-TB lineage2.2.1 None
ERR2516523 MDR-TB lineage4.1.1 pe
SAMN02584640 MDR-TB lineage4.2.1 md
ERR688019 Pre-XDR-TB lineage3 None
ERR2041795 MDR-TB lineage4.2.2.1 rs
ERR2041712 MDR-TB lineage4.2.2.1 rs
ERR4798286 Pre-XDR-TB lineage2.2.1 in
ERR2041688 MDR-TB lineage4.2.2.1 rs
ERR550838 MDR-TB lineage2.2.1 None
ERR1035350 MDR-TB lineage4.3.2 br
SRR26937022 MDR-TB lineage2.2.1 None
ERR2307743 MDR-TB lineage2.2.1 None
SRR7646049 Pre-XDR-TB lineage4.2.1 None
ERR9120011 MDR-TB lineage2.2.1 None
SRR26937090 MDR-TB lineage2.2.1 None
ERR4811328 Pre-XDR-TB lineage2.2.2 cn
SRR21576725 MDR-TB lineage2.2.1 None
ERR11798760 MDR-TB lineage4.2.1 None
ERR4553424 RR-TB lineage2.2.1 None
SRR15723130 HR-TB lineage2.2.1 None
SRR14801551 HR-TB lineage4.2.1 None
ERR4423738 MDR-TB lineage4.3.4.2.1 None
SRR15364444 Pre-XDR-TB lineage2.2.1 None
ERR6358799 MDR-TB lineage4.6.1.2 None
ERR10748333 MDR-TB lineage2.2.1 None
SRR6484982 MDR-TB lineage2.2.1 None
ERR1035344 MDR-TB lineage4.3.2 br
ERR4827803 MDR-TB lineage2.2.1 None
ERR11068479 Pre-XDR-TB lineage2.2.1 None
ERR2041791 MDR-TB lineage4.2.2.1 rs
SRR6458406 Pre-XDR-TB lineage2.2.1 None
ERR2041723 Pre-XDR-TB lineage4.2.2.1 rs
SRR1163359 MDR-TB lineage3.1.1 None
ERR2516746 MDR-TB lineage3 gb
SRR25207349 Pre-XDR-TB lineage2.2.1 None
SRR10040192 MDR-TB lineage2.2.1 None
ERR550897_ERR550896 MDR-TB lineage4.4.1.1 None
SRR1166082 Pre-XDR-TB lineage4.2.1 None
SRR12142348 MDR-TB lineage2.2.1 None
SRR26331646 MDR-TB lineage4.3.2.1 None
ERR551726_ERR551727 MDR-TB lineage2.2.1 None
SRR6832514 HR-TB lineage4.2.1 None
SRR24709873 MDR-TB lineage2.2.1 None
ERR10748252 MDR-TB lineage2.2.1.1 None
ERR2653117 Pre-XDR-TB lineage4.3.4.2 None
ERR8025664 Pre-XDR-TB lineage4.1.1.3 None
SAMN02414894 MDR-TB lineage3.1.1 se
ERR4829820 Pre-XDR-TB lineage4.2.1 it
ERR2041797 MDR-TB lineage4.2.2.1 None
SRR1166300 MDR-TB lineage4.2.1 None
ERR5987218 MDR-TB lineage2.2.1 None
SRR6831995 MDR-TB lineage2.2.1 None
ERR2041756 MDR-TB lineage4.2.2.1 rs
ERR6358829 MDR-TB lineage4.6.1.2 None
ERR10748497 MDR-TB lineage2.2.1 None
SRR10380213 MDR-TB lineage4.2.1 None
ERR9993009 XDR-TB lineage4.1.1.3 None
SRR7755680 Pre-XDR-TB lineage4.2.1 None
SRR1166261 MDR-TB lineage4.2.1 None
ERR6359012 MDR-TB lineage4.6.1.2 None
ERR2516597 XDR-TB lineage4.1.2.1 pe
ERR2041785 Pre-XDR-TB lineage4.2.2.1 rs
SRR21887690 XDR-TB lineage2.2.1 None
SRR10869284 Pre-XDR-TB lineage4.1.1.3 None
SRR24114352 Pre-XDR-TB lineage3 None
ERR405204 MDR-TB lineage3.1.1 None
ERR502890 MDR-TB lineage2.2.1 None
SRR15315983 MDR-TB lineage2.2.1 None
ERR2517112 Pre-XDR-TB lineage2.2.1 gb
SRR1163215 MDR-TB lineage3.1.1 None
ERR550897 MDR-TB lineage4.4.1.1 None
SRR5341363 Pre-XDR-TB lineage3 in
SRR6824285 MDR-TB lineage2.2.1 cn
ERR2516451 MDR-TB lineage4.1.2.1 pe
SRR2100419 Pre-XDR-TB lineage2.2.1 None
SRR20632810 Pre-XDR-TB lineage2.2.1 None
SRR28393940 RR-TB lineage4.1.1.3 None
SRR28393353 MDR-TB lineage4.3.2 None
SRR28240213 MDR-TB lineage4.3.3 None
ERR11775734 MDR-TB lineage2.2.1 None
SRR27069381 Pre-XDR-TB lineage2.2.2 None
SRR28706697 MDR-TB lineage2.2.1 None
ERR3335765 Pre-XDR-TB lineage3 pk
ERR3335778 Pre-XDR-TB lineage3 pk
ERR3335782 Pre-XDR-TB lineage3 pk
ERR2706930 MDR-TB lineage5.2 cd
ERR1035311 MDR-TB lineage4.4.1 br
SRR671868 MDR-TB lineage4.5 cn
SRR6824465 MDR-TB lineage2.2.1 cn
SRR10869203 Pre-XDR-TB lineage4.1.1.3 None
ERR6358994 MDR-TB lineage4.6.1.2 None
SRR1146360 MDR-TB lineage3.1.1 None
ERR2041763 MDR-TB lineage4.2.2.1 rs
SRR3105796 Pre-XDR-TB lineage3 None
ERR2516904 MDR-TB lineage4.2.2.2 gb
SRR1723793 MDR-TB lineage2.2.1 cn