Rv3794 - c.-8C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
4 RR-TB
9 HR-TB
172 MDR-TB
93 Pre-XDR-TB
8 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 15 |
| lineage4.2.2.1 | 23 |
| lineage2.2.1 | 80 |
| lineage2.2.1.1 | 2 |
| lineage4.1.2.1 | 9 |
| lineage4.3.4.2.1 | 5 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage3 | 21 |
| lineage4.6.1.2 | 9 |
| lineage4.3.2 | 4 |
| lineage4.1.1.3 | 25 |
| lineage3.1.1 | 8 |
| lineage4.3.4.2 | 6 |
| lineage1.2.2.1;lineage2.2.1 | 1 |
| lineage4.2.1 | 29 |
| lineage1.1.2 | 2 |
| lineage2.2.1.2 | 3 |
| lineage4.3.2.1 | 2 |
| lineage3.1.1;lineage4 | 5 |
| lineage4.4.2 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.9 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.6.3 | 1 |
| lineage5.2 | 4 |
| lineage4.3.4.1 | 1 |
| lineage4.5 | 3 |
| lineage4.1.1 | 1 |
| lineage2.2.2 | 5 |
| lineage2.2.2;lineage4.1.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| 1 | |
| lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage6.3.3 | 1 |
| lineage4.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.1.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 287 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28351392 | MDR-TB | lineage4.3.3 | None | ERR2041737 | MDR-TB | lineage4.2.2.1 | None | SRR24709873 | MDR-TB | lineage2.2.1 | None | ERR10748252 | MDR-TB | lineage2.2.1.1 | None | SRR28394029 | MDR-TB | lineage4.1.2.1 | None | ERR4423738 | MDR-TB | lineage4.3.4.2.1 | None | SRR21576725 | MDR-TB | lineage2.2.1 | None | ERR551727 | MDR-TB | lineage2.2.1 | None | SRR25827550 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1 | None | ERR688048 | Pre-XDR-TB | lineage3 | None | ERR550838 | MDR-TB | lineage2.2.1 | None | ERR5865792 | MDR-TB | lineage4.3.3 | None | ERR6359049 | MDR-TB | lineage4.6.1.2 | None | ERR1035350 | MDR-TB | lineage4.3.2 | br | SRR29096852 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1146360 | MDR-TB | lineage3.1.1 | None | SRR11348143 | MDR-TB | lineage4.3.4.2 | None | ERR11775734 | MDR-TB | lineage2.2.1 | None | ERR10748243 | MDR-TB | lineage1.2.2.1;lineage2.2.1 | None | SRR6256976 | Pre-XDR-TB | lineage4.2.1 | ru | SRR16088478 | MDR-TB | lineage4.2.1 | None | ERR13260066 | MDR-TB | lineage1.1.2 | None | ERR6359020 | MDR-TB | lineage4.6.1.2 | None | ERR6358799 | MDR-TB | lineage4.6.1.2 | None | ERR10748333 | MDR-TB | lineage2.2.1 | None | SRR29017155 | RR-TB | lineage2.2.1.2 | None | SRR15014681 | MDR-TB | lineage4.3.4.2 | None | SRR21887668 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358734 | MDR-TB | lineage4.6.1.2 | None | SRR29055839 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR26331646 | MDR-TB | lineage4.3.2.1 | None | SRR12142348 | MDR-TB | lineage2.2.1 | None | SRR29056327 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29539306 | Pre-XDR-TB | lineage4.3.3 | None | SRR29772602 | Pre-XDR-TB | lineage1.1.2 | None | SRR29055913 | MDR-TB | lineage2.2.1 | None | SRR29093183 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6484982 | MDR-TB | lineage2.2.1 | None | SRR29093188 | RR-TB | lineage4.1.1.3 | None | ERR11068479 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068339 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887691 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290380 | MDR-TB | lineage3.1.1;lineage4 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR13284994 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR10748424 | MDR-TB | lineage4.1.1.3 | None | ERR9993009 | XDR-TB | lineage4.1.1.3 | None | ERR550896 | MDR-TB | lineage4.4.1.1 | None | SRR1163215 | MDR-TB | lineage3.1.1 | None | SRR1169165 | MDR-TB | lineage4.2.1 | None | SRR1166261 | MDR-TB | lineage4.2.1 | None | SRR1166300 | MDR-TB | lineage4.2.1 | None | SRR29772443 | MDR-TB | lineage3 | None | SRR28393940 | RR-TB | lineage4.1.1.3 | None | SRR29231803 | MDR-TB | lineage4.3.4.2.1 | None | ERR3335782 | Pre-XDR-TB | lineage3 | pk | ERR3335778 | Pre-XDR-TB | lineage3 | pk | ERR1035344 | MDR-TB | lineage4.3.2 | br | ERR2510524 | MDR-TB | lineage3 | pk | SRR29289387 | MDR-TB | lineage3 | None | SRR29289416 | XDR-TB | lineage3 | None | ERR3335765 | Pre-XDR-TB | lineage3 | pk | SRR16087920 | MDR-TB | lineage4.3.3 | None | ERR550838_ERR550837 | MDR-TB | lineage2.2.1 | None | ERR4797545 | Pre-XDR-TB | lineage2.2.1 | in | SRR29093193 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR987772 | HR-TB | lineage4.9 | None | SAMN02584611 | MDR-TB | lineage4.2.1 | md | ERR3794362 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR9992753 | XDR-TB | lineage4.1.1.3 | None | SRR28393353 | MDR-TB | lineage4.3.2 | None | SRR27332324 | MDR-TB | lineage4.6.3 | None | SRR6458406 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707190 | MDR-TB | lineage4.3.4.2.1 | cd | ERR2706914 | MDR-TB | lineage5.2 | cd | ERR1023303 | MDR-TB | lineage3.1.1 | None | ERR4813878 | MDR-TB | lineage4.3.4.1 | br | ERR4829820 | Pre-XDR-TB | lineage4.2.1 | it | SRR25207302 | MDR-TB | lineage4.5 | None | ERR8665827 | Pre-XDR-TB | lineage2.2.1 | None | ERR11067760 | Pre-XDR-TB | lineage2.2.1 | None | SRR3105796 | Pre-XDR-TB | lineage3 | None | SAMEA2533511 | MDR-TB | lineage2.2.1 | uz | SAMEA2533548 | MDR-TB | lineage4.4.1.1 | uz | SAMEA2534150 | MDR-TB | lineage2.2.1 | uz | ERR2516523 | MDR-TB | lineage4.1.1 | pe | ERR2516451 | MDR-TB | lineage4.1.2.1 | pe | ERR2516597 | XDR-TB | lineage4.1.2.1 | pe | SRR6824285 | MDR-TB | lineage2.2.1 | cn | SRR6824465 | MDR-TB | lineage2.2.1 | cn | ERR983228 | MDR-TB | lineage2.2.1 | None | ERR9806988 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9120011 | MDR-TB | lineage2.2.1 | None | SRR15368978 | MDR-TB | lineage2.2.1 | None | ERR2600530 | MDR-TB | lineage2.2.1 | None | ERR158606 | MDR-TB | lineage2.2.1 | gb | ERR8774435 | MDR-TB | lineage4.3.4.2.1 | None | SRR29539791 | MDR-TB | lineage4.3.3 | None | ERR551726 | MDR-TB | lineage2.2.1 | None | SRR26937022 | MDR-TB | lineage2.2.1 | None | ERR2307743 | MDR-TB | lineage2.2.1 | None | SRR27069381 | Pre-XDR-TB | lineage2.2.2 | None | ERR405204 | MDR-TB | lineage3.1.1 | None | ERR13288961 | XDR-TB | lineage4.1.1.3 | None | ERR13289008 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | None | ERR10762467 | Pre-XDR-TB | lineage4.2.1 | None | SRR1169022 | Pre-XDR-TB | lineage4.2.1 | None | SRR1169011 | MDR-TB | lineage4.2.1 | None | ERR11798760 | MDR-TB | lineage4.2.1 | None | ERR4553424 | RR-TB | lineage2.2.1 | None | ERR9119799 | MDR-TB | lineage2.2.1 | None | SRR15723130 | HR-TB | lineage2.2.1 | None | SRR15014781 | MDR-TB | lineage4.3.4.2 | None | ERR10748497 | MDR-TB | lineage2.2.1 | None | ERR5865899 | MDR-TB | lineage2.2.1 | None | ERR13290379 | MDR-TB | lineage3.1.1;lineage4 | None | SRR25207349 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119717 | MDR-TB | lineage2.2.1 | None | SRR10040192 | MDR-TB | lineage2.2.1 | None | ERR6358931 | MDR-TB | lineage4.6.1.2 | None | SRR6831901 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831995 | MDR-TB | lineage2.2.1 | None | ERR9806916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6358994 | MDR-TB | lineage4.6.1.2 | None | ERR551726_ERR551727 | MDR-TB | lineage2.2.1 | None | SRR6832514 | HR-TB | lineage4.2.1 | None | ERR2653117 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR8025664 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11069059 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR3743408 | Pre-XDR-TB | lineage4.2.1 | None | SRR29539207 | MDR-TB | lineage4.3.3 | None | ERR10748452 | MDR-TB | lineage2.2.1 | None | ERR9120010 | MDR-TB | lineage2.2.1 | None | SRR7755680 | Pre-XDR-TB | lineage4.2.1 | None | SRR29055522 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR15315983 | MDR-TB | lineage2.2.1 | None | ERR11082810 | MDR-TB | lineage4.2.2.1 | None | SRR24114352 | Pre-XDR-TB | lineage3 | None | SRR21276917 | MDR-TB | lineage2.2.1 | None | ERR4796605 | MDR-TB | lineage3.1.2.1 | in | SRR29055891 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797326 | MDR-TB | lineage2.2.1 | in | SAMN02414894 | MDR-TB | lineage3.1.1 | se | ERR550897 | MDR-TB | lineage4.4.1.1 | None | SAMN02584640 | MDR-TB | lineage4.2.1 | md | SAMN02584589 | MDR-TB | lineage4.2.1 | md | ERR6358829 | MDR-TB | lineage4.6.1.2 | None | SRR20632810 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810851 | Pre-XDR-TB | lineage2.2.2 | cn | SRR21690032 | HR-TB | lineage4.3.3 | None | ERR4811334 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4553852 | Sensitive | None | ERR1034616 | Pre-XDR-TB | lineage3 | pk | ERR4811328 | Pre-XDR-TB | lineage2.2.2 | cn | ERR2706930 | MDR-TB | lineage5.2 | cd | ERR4829094 | Pre-XDR-TB | lineage3.1.1 | dj | ERR5987218 | MDR-TB | lineage2.2.1 | None | ERR1873550 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2516746 | MDR-TB | lineage3 | gb | ERR2516904 | MDR-TB | lineage4.2.2.2 | gb | ERR2517112 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2517033 | MDR-TB | lineage2.2.1 | gb | ERR2516775 | MDR-TB | lineage2.2.1 | gb | ERR2516769 | MDR-TB | lineage2.2.1 | gb | ERR2515475 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1952141 | Pre-XDR-TB | lineage2.2.1 | ie | ERR553107 | MDR-TB | lineage2.2.1 | in | ERR2041785 | Pre-XDR-TB | lineage4.2.2.1 | rs | ERR2041688 | MDR-TB | lineage4.2.2.1 | rs | ERR2041734 | MDR-TB | lineage4.2.2.1 | rs | ERR2041709 | MDR-TB | lineage4.2.2.1 | rs | ERR2041746 | MDR-TB | lineage4.2.2.1 | rs | ERR2041753 | MDR-TB | lineage4.2.2.1 | rs | ERR2041689 | MDR-TB | lineage4.2.2.1 | rs | ERR2041756 | MDR-TB | lineage4.2.2.1 | rs | ERR2041723 | Pre-XDR-TB | lineage4.2.2.1 | rs | ERR2041777 | MDR-TB | lineage4.2.2.1 | rs | ERR2041795 | MDR-TB | lineage4.2.2.1 | rs | ERR2041738 | MDR-TB | lineage4.2.2.1 | rs | ERR2041791 | MDR-TB | lineage4.2.2.1 | rs | ERR2041798 | MDR-TB | lineage4.2.2.1 | rs | ERR2041712 | MDR-TB | lineage4.2.2.1 | rs | ERR2041796 | MDR-TB | lineage4.2.2.1 | rs | ERR2041763 | MDR-TB | lineage4.2.2.1 | rs | SRR5341363 | Pre-XDR-TB | lineage3 | in | ERR108512 | MDR-TB | lineage2.2.1;lineage4.3.3 | ru | SRR22251593 | MDR-TB | lineage2.2.1 | None | SRR3724799 | MDR-TB | lineage4.3.4.2.1 | cd | SRR1169083 | MDR-TB | lineage4.2.1 | None | SRR671868 | MDR-TB | lineage4.5 | cn | ERR688019 | Pre-XDR-TB | lineage3 | None | SRR11348141 | MDR-TB | lineage4.3.4.2 | None | ERR2510711 | Pre-XDR-TB | lineage4.2.1 | it | ERR2307748 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646049 | Pre-XDR-TB | lineage4.2.1 | None | ERR13286205 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289362 | MDR-TB | lineage4.3.2.1 | None | ERR13286109 | MDR-TB | lineage4.4.1.1.1 | None | ERR13288959 | MDR-TB | lineage4.1.1.3 | None | ERR10680188 | MDR-TB | lineage6.3.3 | None | ERR7737653 | MDR-TB | lineage3 | None | ERR11138608 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034587 | Pre-XDR-TB | lineage3 | pk | SRR14801551 | HR-TB | lineage4.2.1 | None | SRR12420679 | MDR-TB | lineage2.2.1 | None | ERR1034615 | Pre-XDR-TB | lineage3 | pk | ERR5987436 | MDR-TB | lineage2.2.1 | None | ERR13290378 | MDR-TB | lineage3.1.1;lineage4 | None | ERR6362477 | MDR-TB | lineage2.2.1 | None | ERR13290381 | MDR-TB | lineage3.1.1;lineage4 | None | SRR15364444 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393386 | MDR-TB | lineage4.1.2.1 | None | SRR29539259 | MDR-TB | lineage4.3.3 | None | SRR21276941 | Pre-XDR-TB | lineage2.2.1 | None | ERR2041797 | MDR-TB | lineage4.2.2.1 | None | SRR6353871 | MDR-TB | lineage2.2.1 | None | ERR688047 | Pre-XDR-TB | lineage3 | None | ERR13285065 | MDR-TB | lineage4.2.2.1 | None | ERR4799543 | Pre-XDR-TB | lineage4.3 | None | SRR29093245 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285766 | Pre-XDR-TB | lineage4.2.1 | None | ERR11044426 | HR-TB | lineage4.3.3 | None | SRR1723793 | MDR-TB | lineage2.2.1 | cn | ERR10748202 | MDR-TB | lineage2.2.1.1 | None | SRR29056305 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1163359 | MDR-TB | lineage3.1.1 | None | ERR550897_ERR550896 | MDR-TB | lineage4.4.1.1 | None | SRR25207281 | Pre-XDR-TB | lineage2.2.1 | None | SRR998857 | Pre-XDR-TB | lineage4.2.1 | None | ERR2041790 | MDR-TB | lineage4.2.2.1 | None | ERR1873446 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR30180339 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645866 | Pre-XDR-TB | lineage4.2.1 | None | SRR29274165 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR868538 | MDR-TB | lineage4.2.2.1 | None | SRR29231691 | MDR-TB | lineage5.2 | None | ERR13267004 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207353 | Pre-XDR-TB | lineage2.2.2 | None | ERR2653083 | Pre-XDR-TB | lineage4.3.3 | None | ERR5865791 | MDR-TB | lineage4.3.3 | None | SRR10040148 | MDR-TB | lineage4.5 | None | SRR21277853 | MDR-TB | lineage2.2.1 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869284 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6832296 | HR-TB | lineage4.2.1 | None | SRR25207198 | Pre-XDR-TB | lineage2.2.2 | None | ERR6358770 | MDR-TB | lineage4.6.1.2 | None | SRR29017067 | MDR-TB | lineage1.2.2.2 | None | ERR3287608 | HR-TB | lineage4.1.2.1 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR6359012 | MDR-TB | lineage4.6.1.2 | None | ERR4827803 | MDR-TB | lineage2.2.1 | None | SRR29093191 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28240213 | MDR-TB | lineage4.3.3 | None | ERR2510451 | Pre-XDR-TB | lineage3 | pk | ERR1035277 | Pre-XDR-TB | lineage4.3.2 | br | ERR15686448 | MDR-TB | lineage4.1.1.1 | None | ERR15686462 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29289110 | XDR-TB | lineage3 | None | ERR16022337 | MDR-TB | lineage4.1.1.1 | None | SRR29289245 | MDR-TB | lineage3 | None | ERR9286000 | MDR-TB | lineage3.1.1 | None | ERR3148194 | MDR-TB | lineage1.2.1.2 | mx | SRR11348147 | MDR-TB | lineage4.3.4.2 | None | SRR21887690 | XDR-TB | lineage2.2.1 | None | ERR4798286 | Pre-XDR-TB | lineage2.2.1 | in | SRR24255997 | MDR-TB | lineage4.3.3 | None | SRR11972430 | MDR-TB | lineage2.2.1 | None | SRR28706697 | MDR-TB | lineage2.2.1 | None | ERR4799873 | Pre-XDR-TB | lineage2.2.1 | in | ERR502890 | MDR-TB | lineage2.2.1 | None | SRR28393334 | MDR-TB | lineage4.1.2.1 | None | SRR29231703 | MDR-TB | lineage5.2 | None | SRR8651556 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02584613 | Pre-XDR-TB | lineage4.2.1 | md | ERR9907706 | MDR-TB | lineage4.3.4 | None | SRR26937090 | MDR-TB | lineage2.2.1 | None | SRR28498580 | Pre-XDR-TB | lineage4.2.1 | None | ERR1035311 | MDR-TB | lineage4.4.1 | br | ERR4828852 | MDR-TB | lineage4.3.3 | None | SRR10380213 | MDR-TB | lineage4.2.1 | None | SRR1144734 | MDR-TB | lineage3.1.1;lineage4 | None | SRR1166082 | Pre-XDR-TB | lineage4.2.1 | None | SRR2100419 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516405 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2516698 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR1166315 | MDR-TB | lineage4.2.1 | None |
|---|
