ERR7911333
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26399258
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29051401
|
Other
|
lineage2.2.1
|
None
|
SRR26400104
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831780
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR13439923
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831794
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR26399217
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067684
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5074065
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26400073
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR6362540
|
RR-TB
|
lineage2.2.1
|
None
|
SRR26399235
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399339
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13439882
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439901
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439915
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439924
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29016910
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439916
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830439
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR13093822
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4832055
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5073550
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR5073895
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR26937038
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22250104
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399413
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828266
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830369
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR13439875
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067563
|
HR-TB
|
lineage2.2.1
|
vn
|
DRR261095
|
Other
|
lineage2.2.1
|
None
|
SRR26399329
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828713
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4828728
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR10465886
|
Other
|
lineage2.2.1
|
None
|
SRR26937074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119267
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831879
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR16370559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26937008
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR13439866
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439902
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067308
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR4830243
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5067240
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073872
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR26399600
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831847
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5065412
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26936985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13439854
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439925
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831851
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR24083707
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399410
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10748418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9029390
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7911331
|
MDR-TB
|
lineage2.2.1
|
vn
|
DRR261138
|
Other
|
lineage2.2.1
|
None
|
SRR26399710
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831971
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR24083642
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8976106
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13289328
|
RR-TB
|
lineage2.2.1
|
None
|
SRR26399699
|
Other
|
lineage2.2.1
|
None
|
DRR261024
|
Other
|
lineage2.2.1
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR26399896
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067695
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065442
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5065511
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4832057
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065611
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4814742
|
Sensitive
|
lineage2.2.1
|
gb
|
SRR5073505
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR22249688
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7737684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399867
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8699776
|
RR-TB
|
lineage2.2.1
|
None
|
ERR7911139
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26936997
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR4828702
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831809
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26399419
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5067613
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4799924
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22251137
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21733247
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29440732
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831737
|
HR-TB
|
lineage2.2.1
|
vn
|
DRR130100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR4831651
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5074179
|
Other
|
lineage2.2.1
|
vn
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5073968
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4830223
|
Other
|
lineage2.2.1
|
vn
|
SRR20969617
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065465
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067272
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR6153065
|
Sensitive
|
lineage2.2.1
|
ca
|
SRR30182605
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR20969626
|
Sensitive
|
lineage2.2.1
|
None
|
SRR21732345
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7737736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828718
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR9119298
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9119268
|
Other
|
lineage2.2.1
|
None
|
ERR4828687
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26936937
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067409
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4831856
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26399156
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399656
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29051429
|
Other
|
lineage2.2.1
|
None
|
ERR7911320
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR5067313
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29093692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
SRR26937013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828697
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5067448
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR5067582
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26400010
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6797404
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7737663
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29053605
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4796757
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR5073802
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5074168
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4831834
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29017491
|
Other
|
lineage2.2.1
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4828477
|
Other
|
lineage2.2.1
|
None
|
ERR4831872
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR26399331
|
Other
|
lineage2.2.1
|
None
|
SRR26937062
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065336
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26399467
|
Other
|
lineage2.2.1
|
None
|
SRR5065350
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5067348
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4828731
|
Other
|
lineage2.2.1
|
vn
|
SRR26399903
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9119437
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370540
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911514
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4831845
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830204
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR21658536
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4828201
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4830339
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26937002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399402
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831861
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4828629
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26399586
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399981
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399530
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4832069
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4831726
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR26399541
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9119219
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399245
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26937064
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24083622
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4831607
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR13439913
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9119362
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5073603
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831817
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4819046
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399485
|
HR-TB
|
lineage2.2.1
|
None
|
SRR26399451
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5073515
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4831765
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4832010
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29017497
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4832048
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4832068
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR30182434
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4808982
|
Sensitive
|
lineage2.2.1
|
za
|
ERR7911506
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831646
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831600
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR13288776
|
RR-TB
|
lineage2.2.1
|
None
|
ERR12141641
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29051154
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067665
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR28351288
|
Sensitive
|
lineage2.2.1
|
None
|
SRR30182762
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831632
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR4828156
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR7737780
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR454960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26399343
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831706
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4832023
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937052
|
Other
|
lineage2.2.1
|
None
|
ERR4831993
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR26937065
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067238
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5067396
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR13266225
|
MDR-TB
|
lineage2.2.1;lineage4.1.2
|
None
|
SRR29093839
|
Sensitive
|
lineage2.2.1
|
None
|
SRR16370542
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR261035
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13289315
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399397
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067243
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5065347
|
Other
|
lineage2.2.1
|
vn
|
ERR4831758
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831770
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR9119290
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5073585
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR21676323
|
Sensitive
|
lineage2.2.1
|
None
|
DRR261168
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26399608
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073595
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR5065343
|
Other
|
lineage2.2.1
|
vn
|
SRR5065522
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5074105
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073670
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR29441074
|
Other
|
lineage2.2.1
|
None
|
ERR4811565
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR26399638
|
Other
|
lineage2.2.1
|
None
|
SRR16151369
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11049615
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7737681
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831922
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR22251917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24083619
|
Sensitive
|
lineage2.2.1
|
None
|
ERR7911115
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
DRR261098
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065460
|
Other
|
lineage2.2.1
|
vn
|
ERR4832001
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21713551
|
Other
|
lineage2.2.1
|
None
|
SRR5065238
|
HR-TB
|
lineage2.2.1
|
vn
|
DRR261136
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5073591
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR26936952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7339132
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096485
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4831999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR4828419
|
Other
|
lineage2.2.1
|
vn
|
SRR26399948
|
Other
|
lineage2.2.1
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6797665
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4832003
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5067697
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5065360
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR4832033
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR5073695
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR7070434
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5065385
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR26399632
|
Other
|
lineage2.2.1
|
None
|
ERR7911484
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4830214
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR10040323
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305744
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2843513
|
Other
|
lineage1.1.1;lineage2.2.1;lineage4
|
None
|
SRR30182645
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399951
|
HR-TB
|
lineage2.2.1
|
None
|