Rv3805c - c.381G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
64 Sensitive
7 RR-TB
115 HR-TB
82 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 11 |
| lineage2.2.1 | 273 |
| lineage2.2.1;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage1.1.1;lineage2.2.1;lineage4 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 308 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR13439875 | HR-TB | lineage2.2.1 | None | SRR26937052 | Other | lineage2.2.1 | None | DRR261095 | Other | lineage2.2.1 | None | SRR26399329 | HR-TB | lineage2.2.1 | None | SRR5065350 | Sensitive | lineage2.2.1 | vn | ERR10465886 | Other | lineage2.2.1 | None | SRR5065336 | MDR-TB | lineage2.2.1 | vn | DRR261035 | Sensitive | lineage2.2.1 | None | ERR9119267 | HR-TB | lineage2.2.1 | None | SRR5065238 | HR-TB | lineage2.2.1 | vn | SRR5065343 | Other | lineage2.2.1 | vn | SRR5065442 | Sensitive | lineage2.2.1 | vn | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5065412 | HR-TB | lineage2.2.1 | vn | SRR5065360 | Sensitive | lineage2.2.1 | vn | SRR5065511 | HR-TB | lineage2.2.1 | vn | SRR5067238 | HR-TB | lineage2.2.1 | vn | SRR5067695 | HR-TB | lineage2.2.1 | vn | SRR16370559 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937062 | MDR-TB | lineage2.2.1 | None | SRR5067348 | MDR-TB | lineage2.2.1 | vn | SRR5067448 | Sensitive | lineage2.2.1 | vn | SRR5067243 | HR-TB | lineage2.2.1 | vn | SRR26937008 | MDR-TB | lineage2.2.1;lineage4 | None | SRR5067308 | Sensitive | lineage2.2.1 | vn | SRR5067240 | HR-TB | lineage2.2.1 | vn | SRR5067665 | HR-TB | lineage2.2.1 | vn | SRR5067272 | HR-TB | lineage2.2.1 | vn | SRR5067684 | HR-TB | lineage2.2.1 | vn | SRR5073515 | Sensitive | lineage2.2.1 | vn | SRR5073670 | Sensitive | lineage2.2.1 | vn | SRR5073695 | HR-TB | lineage2.2.1 | vn | SRR5073872 | Sensitive | lineage2.2.1 | vn | SRR5073550 | HR-TB | lineage2.2.1 | vn | SRR5073895 | Sensitive | lineage2.2.1 | vn | SRR5073591 | HR-TB | lineage2.2.1 | vn | SRR5073802 | Sensitive | lineage2.2.1 | vn | SRR5074168 | HR-TB | lineage2.2.1 | vn | SRR5074105 | HR-TB | lineage2.2.1 | vn | SRR5074116 | Sensitive | lineage2.2.1 | vn | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399467 | Other | lineage2.2.1 | None | ERR9119290 | HR-TB | lineage2.2.1 | None | ERR9119437 | MDR-TB | lineage2.2.1 | None | DRR261168 | Sensitive | lineage2.2.1 | None | SRR26936985 | MDR-TB | lineage2.2.1 | None | ERR9029390 | Sensitive | lineage2.2.1 | None | ERR13289328 | RR-TB | lineage2.2.1 | None | ERR13288776 | RR-TB | lineage2.2.1 | None | SRR26399710 | HR-TB | lineage2.2.1 | None | SRR16370540 | MDR-TB | lineage2.2.1 | None | ERR8699776 | RR-TB | lineage2.2.1 | None | SRR26399699 | Other | lineage2.2.1 | None | SRR26399638 | Other | lineage2.2.1 | None | SRR16151369 | Sensitive | lineage2.2.1 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR11049615 | HR-TB | lineage2.2.1 | None | ERR7737681 | MDR-TB | lineage2.2.1 | None | ERR13439916 | HR-TB | lineage2.2.1 | None | SRR29016933 | HR-TB | lineage2.2.1 | None | ERR7737684 | MDR-TB | lineage2.2.1 | None | SRR26399867 | Sensitive | lineage2.2.1 | None | SRR26399217 | HR-TB | lineage2.2.1 | None | SRR26936997 | HR-TB | lineage2.2.1 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR28868389 | Sensitive | lineage2.2.1 | None | ERR13439854 | HR-TB | lineage2.2.1 | None | SRR21733247 | Sensitive | lineage2.2.1 | None | ERR4832001 | HR-TB | lineage2.2.1 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29051154 | MDR-TB | lineage2.2.1 | None | SRR29053605 | Sensitive | lineage2.2.1 | None | ERR4832055 | MDR-TB | lineage2.2.1 | None | SRR29056284 | Sensitive | lineage2.2.1 | None | SRR26399948 | Other | lineage2.2.1 | None | ERR13439901 | HR-TB | lineage2.2.1 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR29093599 | RR-TB | lineage2.2.1 | None | SRR6797665 | Sensitive | lineage2.2.1 | None | SRR26399541 | HR-TB | lineage2.2.1 | None | ERR9119219 | HR-TB | lineage2.2.1 | None | ERR13093822 | Sensitive | lineage2.2.1 | None | SRR26399235 | HR-TB | lineage2.2.1 | None | SRR21732345 | HR-TB | lineage2.2.1 | None | ERR7737736 | MDR-TB | lineage2.2.1 | None | ERR13439913 | HR-TB | lineage2.2.1 | None | SRR29441074 | Other | lineage2.2.1 | None | ERR13258402 | MDR-TB | lineage2.2.1 | None | SRR29051401 | Other | lineage2.2.1 | None | SRR30182434 | MDR-TB | lineage2.2.1 | None | ERR9119298 | Sensitive | lineage2.2.1 | None | SRR10040323 | MDR-TB | lineage2.2.1 | None | ERR9119362 | HR-TB | lineage2.2.1 | None | SRR10305744 | Sensitive | lineage2.2.1 | None | SRR26936937 | MDR-TB | lineage2.2.1 | None | ERR11067638 | MDR-TB | lineage2.2.1 | None | SRR29093787 | Other | lineage2.2.1 | None | SRR26399156 | HR-TB | lineage2.2.1 | None | ERR2843513 | Other | lineage1.1.1;lineage2.2.1;lineage4 | None | SRR29051149 | Other | lineage1.1.1;lineage2.2.1;lineage4 | None | ERR4796757 | Pre-XDR-TB | lineage2.2.1 | in | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR26399951 | HR-TB | lineage2.2.1 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26937013 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4831794 | MDR-TB | lineage2.2.1.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4831737 | HR-TB | lineage2.2.1 | vn | ERR7911115 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4828266 | Sensitive | lineage2.2.1 | None | ERR6362540 | RR-TB | lineage2.2.1 | None | ERR7911139 | MDR-TB | lineage2.2.1 | vn | ERR4831872 | MDR-TB | lineage2.2.1 | vn | ERR4831632 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4831847 | MDR-TB | lineage2.2.1 | vn | ERR4831726 | HR-TB | lineage2.2.1 | vn | ERR4831770 | HR-TB | lineage2.2.1 | vn | ERR4831809 | MDR-TB | lineage2.2.1 | vn | ERR4831765 | HR-TB | lineage2.2.1 | vn | ERR4831758 | MDR-TB | lineage2.2.1 | vn | ERR4831971 | HR-TB | lineage2.2.1 | vn | ERR4831834 | HR-TB | lineage2.2.1 | vn | ERR4831845 | HR-TB | lineage2.2.1 | None | ERR4831861 | MDR-TB | lineage2.2.1 | vn | ERR4831817 | HR-TB | lineage2.2.1 | vn | ERR4832003 | HR-TB | lineage2.2.1 | vn | ERR4831922 | MDR-TB | lineage2.2.1 | vn | ERR4831879 | HR-TB | lineage2.2.1 | vn | ERR4832057 | HR-TB | lineage2.2.1 | vn | ERR4832010 | HR-TB | lineage2.2.1 | vn | SRR26399339 | MDR-TB | lineage2.2.1 | None | ERR4832023 | MDR-TB | lineage2.2.1 | None | ERR4832048 | MDR-TB | lineage2.2.1 | vn | ERR4832069 | Sensitive | lineage2.2.1 | vn | ERR4828697 | MDR-TB | lineage2.2.1 | vn | ERR4828713 | Sensitive | lineage2.2.1 | vn | ERR4828731 | Other | lineage2.2.1 | vn | ERR4828728 | HR-TB | lineage2.2.1 | vn | ERR7911331 | MDR-TB | lineage2.2.1 | vn | ERR7911333 | MDR-TB | lineage2.2.1 | vn | ERR4828156 | HR-TB | lineage2.2.1 | vn | ERR4828201 | HR-TB | lineage2.2.1 | vn | ERR4830214 | HR-TB | lineage2.2.1 | vn | ERR4831600 | MDR-TB | lineage2.2.1 | vn | ERR4830204 | HR-TB | lineage2.2.1 | vn | ERR4830243 | HR-TB | lineage2.2.1 | vn | ERR4831780 | MDR-TB | lineage2.2.1 | vn | ERR4831851 | HR-TB | lineage2.2.1 | vn | ERR4830223 | Other | lineage2.2.1 | vn | ERR4830339 | HR-TB | lineage2.2.1 | vn | ERR4831856 | MDR-TB | lineage2.2.1 | vn | ERR4830369 | Sensitive | lineage2.2.1 | vn | ERR4831993 | MDR-TB | lineage2.2.1 | vn | ERR4831999 | MDR-TB | lineage2.2.1 | None | ERR4832033 | HR-TB | lineage2.2.1 | vn | ERR4832068 | HR-TB | lineage2.2.1 | vn | ERR4814742 | Sensitive | lineage2.2.1 | gb | SRR3675243 | Other | lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR5065347 | Other | lineage2.2.1 | vn | SRR26937065 | MDR-TB | lineage2.2.1 | None | SRR5065425 | HR-TB | lineage2.2.1 | vn | SRR26937074 | MDR-TB | lineage2.2.1 | None | SRR29093839 | Sensitive | lineage2.2.1 | None | SRR16370542 | MDR-TB | lineage2.2.1 | None | SRR5065460 | Other | lineage2.2.1 | vn | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR5065611 | HR-TB | lineage2.2.1 | vn | SRR5065361 | HR-TB | lineage2.2.1 | vn | SRR5065522 | HR-TB | lineage2.2.1 | vn | SRR5065385 | HR-TB | lineage2.2.1 | vn | SRR5065465 | Sensitive | lineage2.2.1 | vn | SRR26399331 | Other | lineage2.2.1 | None | SRR5067396 | HR-TB | lineage2.2.1 | vn | SRR5067582 | HR-TB | lineage2.2.1 | vn | SRR5067613 | HR-TB | lineage2.2.1 | vn | SRR5067409 | HR-TB | lineage2.2.1 | vn | SRR5067563 | HR-TB | lineage2.2.1 | vn | SRR5067697 | HR-TB | lineage2.2.1 | vn | SRR5067313 | HR-TB | lineage2.2.1 | vn | SRR26399397 | Sensitive | lineage2.2.1 | None | SRR5073595 | Sensitive | lineage2.2.1 | vn | SRR5073505 | HR-TB | lineage2.2.1 | vn | SRR5073585 | HR-TB | lineage2.2.1 | vn | SRR5073968 | Sensitive | lineage2.2.1 | vn | SRR5073603 | MDR-TB | lineage2.2.1 | vn | SRR5074065 | HR-TB | lineage2.2.1 | vn | SRR5074179 | Other | lineage2.2.1 | vn | SRR26399600 | Sensitive | lineage2.2.1 | None | SRR26399903 | HR-TB | lineage2.2.1 | None | SRR21676323 | Sensitive | lineage2.2.1 | None | ERR13439925 | MDR-TB | lineage2.2.1 | None | SRR26399608 | Sensitive | lineage2.2.1 | None | SRR24083707 | Sensitive | lineage2.2.1 | None | ERR13289315 | Sensitive | lineage2.2.1 | None | SRR26399410 | HR-TB | lineage2.2.1 | None | ERR10748418 | MDR-TB | lineage2.2.1 | None | DRR261138 | Other | lineage2.2.1 | None | SRR24083642 | Sensitive | lineage2.2.1 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | DRR261024 | Other | lineage2.2.1 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399896 | HR-TB | lineage2.2.1 | None | SRR22251917 | MDR-TB | lineage2.2.1 | None | SRR24083619 | Sensitive | lineage2.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | DRR261098 | Sensitive | lineage2.2.1 | None | SRR21658536 | Sensitive | lineage2.2.1 | None | ERR13439915 | HR-TB | lineage2.2.1 | None | ERR13439923 | MDR-TB | lineage2.2.1 | None | SRR26937002 | MDR-TB | lineage2.2.1 | None | SRR30182762 | MDR-TB | lineage2.2.1 | None | SRR22249688 | Sensitive | lineage2.2.1 | None | SRR29050830 | MDR-TB | lineage2.2.1 | None | SRR29050798 | Sensitive | lineage2.2.1 | None | SRR29096485 | RR-TB | lineage2.2.1 | None | SRR29016910 | HR-TB | lineage2.2.1 | None | SRR21713551 | Other | lineage2.2.1 | None | DRR261136 | Sensitive | lineage2.2.1 | None | SRR26399402 | HR-TB | lineage2.2.1 | None | SRR26936952 | Pre-XDR-TB | lineage2.2.1 | None | ERR7339132 | HR-TB | lineage2.2.1 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR26399419 | HR-TB | lineage2.2.1 | None | SRR22251137 | HR-TB | lineage2.2.1 | None | DRR130100 | MDR-TB | lineage2.2.1 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR29051121 | Sensitive | lineage2.2.1 | None | SRR26399586 | Sensitive | lineage2.2.1 | None | SRR20969617 | Sensitive | lineage2.2.1 | None | ERR13439882 | HR-TB | lineage2.2.1 | None | SRR26399981 | HR-TB | lineage2.2.1 | None | SRR26399530 | MDR-TB | lineage2.2.1 | None | ERR13266225 | MDR-TB | lineage2.2.1;lineage4.1.2 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29440732 | MDR-TB | lineage2.2.1 | None | SRR30182645 | MDR-TB | lineage2.2.1 | None | SRR7070434 | Sensitive | lineage2.2.1 | None | SRR20969626 | Sensitive | lineage2.2.1 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399245 | HR-TB | lineage2.2.1 | None | SRR26937064 | MDR-TB | lineage2.2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR26399632 | Other | lineage2.2.1 | None | SRR24083622 | Sensitive | lineage2.2.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR9119268 | Other | lineage2.2.1 | None | ERR13439866 | HR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | DRR454962 | Pre-XDR-TB | lineage2.2.1 | None | ERR13439924 | MDR-TB | lineage2.2.1 | None | ERR4819046 | Sensitive | lineage2.2.1 | None | SRR29051048 | HR-TB | lineage2.2.1 | None | SRR26399485 | HR-TB | lineage2.2.1 | None | SRR26399656 | Sensitive | lineage2.2.1 | None | ERR13439902 | HR-TB | lineage2.2.1 | None | SRR26399451 | HR-TB | lineage2.2.1 | None | SRR29093692 | MDR-TB | lineage2.2.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29017497 | HR-TB | lineage2.2.1 | None | ERR4800195 | Pre-XDR-TB | lineage2.2.1 | in | SRR26399258 | MDR-TB | lineage2.2.1.1 | None | SRR29056096 | Sensitive | lineage2.2.1 | None | SRR26399178 | HR-TB | lineage2.2.1 | None | SRR29051429 | Other | lineage2.2.1 | None | SRR30182605 | Sensitive | lineage2.2.1 | None | ERR4799924 | Pre-XDR-TB | lineage2.2.1 | in | SRR29051170 | HR-TB | lineage2.2.1 | None | SRR26400104 | MDR-TB | lineage2.2.1 | None | ERR4808982 | Sensitive | lineage2.2.1 | za | ERR12141641 | Sensitive | lineage2.2.1 | None | SRR28351288 | Sensitive | lineage2.2.1 | None | SRR26400010 | HR-TB | lineage2.2.1 | None | SRR26400073 | HR-TB | lineage2.2.1 | None | SRR6797404 | Sensitive | lineage2.2.1 | None | SRR6153065 | Sensitive | lineage2.2.1 | ca | ERR4831645 | MDR-TB | lineage2.2.1 | vn | ERR4831607 | MDR-TB | lineage2.2.1 | vn | ERR4831706 | HR-TB | lineage2.2.1 | vn | ERR4831646 | MDR-TB | lineage2.2.1 | vn | ERR4831651 | MDR-TB | lineage2.2.1 | vn | ERR7911320 | MDR-TB | lineage2.2.1 | vn | ERR4828419 | Other | lineage2.2.1 | vn | ERR7911484 | MDR-TB | lineage2.2.1 | vn | ERR4828702 | MDR-TB | lineage2.2.1 | vn | ERR7911506 | MDR-TB | lineage2.2.1 | vn | ERR4830439 | MDR-TB | lineage2.2.1 | vn | ERR7911514 | MDR-TB | lineage2.2.1 | vn | ERR4811565 | Sensitive | lineage2.2.1 | cn | ERR7737663 | MDR-TB | lineage2.2.1 | None | ERR4828477 | Other | lineage2.2.1 | None | ERR4828629 | HR-TB | lineage2.2.1 | vn | ERR4828687 | MDR-TB | lineage2.2.1 | None | ERR4828718 | HR-TB | lineage2.2.1 | vn | ERR7737780 | MDR-TB | lineage2.2.1 | None | DRR454960 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399343 | HR-TB | lineage2.2.1 | None | ERR8976106 | Sensitive | lineage2.2.1 | None | SRR26937038 | MDR-TB | lineage2.2.1 | None | SRR22250104 | Sensitive | lineage2.2.1 | None | SRR26399413 | HR-TB | lineage2.2.1 | None | SRR29017491 | Other | lineage2.2.1 | None |
|---|
