lineage | Count |
---|---|
lineage4.8 | 20 |
lineage4.3.2 | 32 |
lineage4.3.3 | 25 |
lineage4.4.2 | 11 |
lineage4.1.3 | 17 |
lineage4.1.2.1 | 14 |
lineage2.2.1 | 69 |
lineage4.1.1.3 | 16 |
lineage4.3.4.2 | 4 |
lineage4.2.1 | 6 |
lineage4.6.1.2 | 5 |
lineage2.2.2 | 4 |
lineage4.2.2.2 | 9 |
lineage4.1.1 | 3 |
lineage4.6.2.2 | 13 |
lineage4.3.4.1 | 9 |
lineage2.2.1.1 | 4 |
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
lineage4.9 | 6 |
lineage3 | 3 |
La1.2.BCG | 1 |
lineage4.9.1 | 1 |
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
lineage3.1 | 1 |
lineage4 | 4 |
lineage2.2.1;lineage4 | 1 |
lineage4.4 | 1 |
lineage4.7 | 1 |
lineage2.2.1;lineage4.8 | 2 |
lineage2.2.1;lineage3;lineage4 | 1 |
lineage2.2.1;lineage3 | 1 |
lineage4.2.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3.2.1 | 3 |
lineage4.4.1.1 | 5 |
1 | |
lineage4.1.2.1;lineage4.3.4.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.5 | 3 |
lineage4.1.1.1 | 1 |
lineage4.6.5 | 1 |
spoligotype | Count |
---|---|
None | 305 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR28045706 | Pre-XDR-TB | lineage4.8 | None |
SRR3724660 | MDR-TB | lineage4.3.2 | cd |
SAMN02403572 | MDR-TB | lineage4.3.3 | za |
SRR15316302 | RR-TB | lineage4.4.2 | None |
SRR998839 | MDR-TB | lineage4.1.3 | None |
SRR1577823 | MDR-TB | lineage4.1.3 | None |
SRR28393855 | Pre-XDR-TB | lineage4.1.2.1 | None |
ERR11798544 | MDR-TB | lineage2.2.1 | None |
ERR11773706 | HR-TB | lineage4.1.1.3 | None |
SRR1049042 | MDR-TB | lineage4.4.2 | None |
SRR998784 | MDR-TB | lineage4.1.3 | None |
SRR29273777 | Pre-XDR-TB | lineage4.8 | None |
ERR4797483 | Pre-XDR-TB | lineage4.8 | in |
ERR5865208 | MDR-TB | lineage2.2.1 | None |
SRR28239447 | MDR-TB | lineage2.2.1 | None |
SRR29017219 | MDR-TB | lineage4.3.4.2 | None |
ERR13275890 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10380010 | MDR-TB | lineage4.2.1 | None |
SRR1169276 | MDR-TB | lineage4.3.3 | None |
SRR29094084 | Pre-XDR-TB | lineage4.1.1.3 | None |
SRR29231762 | MDR-TB | lineage4.6.1.2 | None |
SRR7646030 | MDR-TB | lineage4.2.1 | None |
ERR4831886 | MDR-TB | lineage2.2.1 | vn |
ERR4972542 | MDR-TB | lineage4.3.2 | None |
ERR4423618 | Pre-XDR-TB | lineage4.3.2 | None |
SRR924218 | Pre-XDR-TB | lineage4.1.1.3 | None |
ERR13242984 | MDR-TB | lineage2.2.1 | None |
ERR13291056 | Pre-XDR-TB | lineage2.2.2 | None |
ERR13264955 | Pre-XDR-TB | lineage4.2.2.2 | None |
DRR130105 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29230787 | MDR-TB | lineage4.3.2 | None |
ERR2516547 | MDR-TB | lineage4.1.1 | pe |
ERR4872085 | MDR-TB | lineage4.6.2.2 | None |
SRR16088252 | MDR-TB | lineage2.2.1 | None |
SRR11033731 | MDR-TB | lineage2.2.1 | None |
ERR9286037 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29231717 | MDR-TB | lineage4.3.4.1 | None |
SRR17406769 | Pre-XDR-TB | lineage4.8 | None |
ERR5865053 | MDR-TB | lineage2.2.1 | None |
ERR4829996 | MDR-TB | lineage4.6.2.2 | None |
ERR13258384 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1367219 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13261476 | MDR-TB | lineage4.8 | None |
ERR5865659 | MDR-TB | lineage4.3.3 | None |
ERR10748537 | MDR-TB | lineage2.2.1 | None |
SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR6079962 | HR-TB | lineage2.2.1.1 | None |
ERR13284523 | MDR-TB | lineage2.2.1 | None |
SRR1577825 | MDR-TB | lineage4.1.3 | None |
ERR2510579 | MDR-TB | lineage4.2.2.2 | pk |
SRR25827402 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None |
ERR4798833 | Pre-XDR-TB | lineage4.8 | in |
ERR3132289 | RR-TB | lineage4.9 | None |
ERR1213837 | RR-TB | lineage4.9 | kr |
ERR2510246 | Pre-XDR-TB | lineage3 | pk |
SRR17657935 | RR-TB | lineage4.9 | None |
ERR4798262 | HR-TB | La1.2.BCG | None |
SRR29231756 | MDR-TB | lineage4.3.2 | None |
ERR2510472 | MDR-TB | lineage3 | pk |
SRR29093631 | MDR-TB | lineage4.9.1 | None |
ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None |
SAMN02231164 | MDR-TB | lineage4.1.3 | None |
SRR3082126 | MDR-TB | lineage4.3.3 | None |
SAMN02403573 | MDR-TB | lineage4.3.3 | za |
ERR2510623 | Pre-XDR-TB | lineage3.1 | pk |
SRR998787 | MDR-TB | lineage4.1.3 | None |
ERR5866161 | MDR-TB | lineage2.2.1 | None |
SRR29289200 | Pre-XDR-TB | lineage4.2.2.2 | None |
SRR29289201 | Pre-XDR-TB | lineage4.2.2.2 | None |
SRR29289202 | Pre-XDR-TB | lineage4.2.2.2 | None |
ERR2864254 | MDR-TB | lineage4.3.4.1 | pt |
ERR11798712 | Pre-XDR-TB | lineage4.2.1 | None |
SRR7755756 | Pre-XDR-TB | lineage4.3.3 | None |
SRR28393392 | Pre-XDR-TB | lineage4.1.1.3 | None |
ERR2707016 | MDR-TB | lineage4.6.1.2 | cd |
ERR2706918 | MDR-TB | lineage4.3.2 | cd |
ERR2707164 | MDR-TB | lineage4.3.2 | cd |
ERR2707093 | MDR-TB | lineage4.3.2 | cd |
ERR2706946 | MDR-TB | lineage4.3.2 | cd |
ERR2707034 | MDR-TB | lineage4.3.2 | cd |
ERR2707032 | MDR-TB | lineage4.3.2 | cd |
ERR2707140 | MDR-TB | lineage4.3.2 | cd |
ERR2707105 | MDR-TB | lineage4.3.4.1 | cd |
ERR2706937 | MDR-TB | lineage4.3.2 | cd |
ERR2706963 | MDR-TB | lineage4.3.2 | cd |
ERR2707118 | MDR-TB | lineage4.3.2 | cd |
ERR2706965 | MDR-TB | lineage4.3.4.1 | cd |
ERR2707115 | MDR-TB | lineage4.3.3 | cd |
ERR7911423 | MDR-TB | lineage2.2.1 | us |
ERR7911628 | Pre-XDR-TB | lineage4.1.1.3 | za |
ERR11243550 | MDR-TB | lineage2.2.1 | None |
ERR4828953 | Pre-XDR-TB | lineage4 | None |
ERR775386 | MDR-TB | lineage4.1.2.1 | pe |
ERR5865207 | MDR-TB | lineage2.2.1 | None |
ERR5865660 | MDR-TB | lineage4.3.3 | None |
SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None |
ERR2516598 | Pre-XDR-TB | lineage4.1.1 | pe |
ERR3132106 | MDR-TB | lineage4.4 | None |
ERR1193661 | MDR-TB | lineage4.3.2 | ao |
ERR1199134 | RR-TB | lineage4.6.1.2 | ug |
ERR552432 | MDR-TB | lineage4.1.3 | cg |
ERR552431 | MDR-TB | lineage4.1.3 | cg |
ERR2679262 | MDR-TB | lineage4.1.3 | None |
ERR1873448 | Pre-XDR-TB | lineage4.1.1.3 | za |
SRR1049043 | MDR-TB | lineage4.4.2 | None |
SRR998840 | MDR-TB | lineage4.1.3 | None |
ERR13266943 | Pre-XDR-TB | lineage4.8 | None |
ERR9907733 | MDR-TB | lineage4.1.1.3 | None |
ERR4831931 | MDR-TB | lineage2.2.1 | vn |
ERR13285063 | MDR-TB | lineage4.3.4.1 | None |
SRR10525349 | Pre-XDR-TB | lineage4.8 | None |
SRR23310891 | MDR-TB | lineage2.2.1 | None |
SRR7592341 | MDR-TB | lineage4.7 | None |
ERR4872206 | MDR-TB | lineage4.6.2.2 | None |
SRR12420601 | MDR-TB | lineage2.2.1 | None |
ERR4800367 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | in |
SAMN02360602 | MDR-TB | lineage4.4.2 | kr |
ERR4872205 | MDR-TB | lineage4.6.2.2 | None |
ERR10680095 | MDR-TB | lineage4.1.2.1 | None |
ERR9119480 | MDR-TB | lineage4.6.2.2 | None |
ERR5866160 | MDR-TB | lineage2.2.1 | None |
SRR7645858 | Pre-XDR-TB | lineage4.3.3 | None |
SRR25827345 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None |
ERR4800625 | Pre-XDR-TB | lineage4.8 | None |
SRR25827749 | XDR-TB | lineage2.2.1;lineage3;lineage4 | None |
ERR6362755 | MDR-TB | lineage4.3.3 | None |
ERR8665633 | Pre-XDR-TB | lineage2.2.1 | None |
SRR3085360 | MDR-TB | lineage4.3.3 | None |
SRR28498687 | MDR-TB | lineage4.2.1 | None |
ERR9286038 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11243552 | MDR-TB | lineage2.2.1 | None |
SRR28393577 | Pre-XDR-TB | lineage4.1.2.1 | None |
ERR4799754 | Pre-XDR-TB | lineage4.8 | in |
ERR4813217 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR5865051 | MDR-TB | lineage2.2.1 | None |
SRR25827306 | Pre-XDR-TB | lineage2.2.1;lineage3 | None |
SRR28706614 | MDR-TB | lineage4.2.1.1 | None |
SRR7755665 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29056333 | MDR-TB | lineage4.3.4.2.1 | None |
ERR987759 | RR-TB | lineage4.6.1.2 | None |
SAMN02053796 | MDR-TB | lineage4.3.2.1 | za |
ERR4799867 | Pre-XDR-TB | lineage4.8 | in |
SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None |
ERR13284346 | MDR-TB | lineage2.2.1 | None |
SRR998838 | MDR-TB | lineage4.1.3 | None |
SRR29093952 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4872239 | MDR-TB | lineage4.6.2.2 | None |
ERR4831898 | MDR-TB | lineage2.2.1 | None |
ERR2510864 | MDR-TB | lineage4.1.2.1 | None |
ERR4872074 | MDR-TB | lineage4.6.2.2 | None |
ERR13289023 | Pre-XDR-TB | lineage4.1.1.3 | None |
ERR4829697 | Pre-XDR-TB | lineage4 | None |
SRR13355778 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR1165662 | MDR-TB | lineage4.3.3 | None |
ERR4797669 | Pre-XDR-TB | lineage4.8 | in |
SRR29055675 | MDR-TB | lineage4.3.3 | None |
SRR3724807 | MDR-TB | lineage4.1.3 | ci |
SRR29230788 | MDR-TB | lineage4.3.2 | None |
ERR8665907 | Pre-XDR-TB | lineage2.2.1 | None |
SRR13232461 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3078000 | MDR-TB | lineage4.2.2.2 | None |
ERR8975717 | XDR-TB | lineage4.1.1.3 | None |
ERR5866116 | MDR-TB | lineage2.2.1 | None |
SRR998786 | MDR-TB | lineage4.1.3 | None |
SRR13232575 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9907800 | MDR-TB | lineage4.4.1.1 | None |
SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None |
ERR4796946 | MDR-TB | lineage4.8 | in |
ERR13284591 | MDR-TB | lineage2.2.1 | None |
SRR29230789 | MDR-TB | lineage4.3.3 | None |
SRR28044699 | MDR-TB | lineage4.9 | None |
ERR2510527 | MDR-TB | lineage4.2.2.2 | pk |
ERR6358715 | MDR-TB | lineage4.6.1.2 | None |
ERR4828053 | MDR-TB | lineage2.2.1 | None |
SRR6511616 | MDR-TB | lineage4.3.4.1 | None |
ERR13289375 | Pre-XDR-TB | lineage4.9 | None |
SRR29093317 | Pre-XDR-TB | lineage4.9 | None |
SRR29231866 | MDR-TB | lineage4.3.2 | None |
ERR4553886 | Pre-XDR-TB | None | |
ERR1034680 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.1 | co |
ERR5865052 | MDR-TB | lineage2.2.1 | None |
SRR28394250 | MDR-TB | lineage4.1.1 | None |
ERR11775983 | MDR-TB | lineage1.2.1.2.1 | None |
ERR2516663 | Pre-XDR-TB | lineage4.1.1.3 | pe |
ERR2307646 | MDR-TB | lineage2.2.1 | None |
SAMN01925647 | Pre-XDR-TB | lineage4.1.1.3 | None |
SRR10040490 | Pre-XDR-TB | lineage4.5 | None |
ERR11080834 | MDR-TB | lineage2.2.1 | None |
SRR28393411 | Pre-XDR-TB | lineage4.1.2.1 | None |
ERR9119582 | MDR-TB | lineage4.6.2.2 | None |
ERR9907674 | MDR-TB | lineage4.4.1.1 | None |
SRR1167373 | MDR-TB | lineage4.3.3 | None |
ERR8665906 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10397204 | MDR-TB | lineage2.2.1 | None |
ERR2510851 | MDR-TB | lineage4.3.2 | it |
SRR1173793 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1169200 | HR-TB | lineage4.3.3 | None |
ERR4828844 | Pre-XDR-TB | lineage4 | None |
ERR5865206 | MDR-TB | lineage2.2.1 | None |
ERR5865050 | MDR-TB | lineage2.2.1 | None |
SRR13870408 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR1577811 | MDR-TB | lineage4.1.3 | None |
SRR1169216 | MDR-TB | lineage4.3.3 | None |
SRR1172275 | MDR-TB | lineage4.3.3 | None |
ERR4796864 | Pre-XDR-TB | lineage4.8 | in |
ERR4797720 | XDR-TB | lineage3 | in |
SRR25827799 | XDR-TB | lineage4.8 | None |
SRR1013646 | MDR-TB | lineage4.4.2 | None |
SRR1013647 | MDR-TB | lineage4.4.2 | None |
SRR13870398 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR998785 | MDR-TB | lineage4.1.3 | None |
SAMN02628504 | Pre-XDR-TB | lineage2.2.1 | ir |
ERR9119619 | MDR-TB | lineage4.6.2.2 | None |
SRR671825 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR11488459 | MDR-TB | lineage4.3.3 | None |
ERR4423612 | Pre-XDR-TB | lineage4.3.2 | None |
ERR11081307 | MDR-TB | lineage4.1.2.1 | None |
SRR29231851 | MDR-TB | lineage4.3.4.1 | None |
SRR29231853 | MDR-TB | lineage4.3.2 | None |
SRR20969356 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13260672 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None |
SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None |
SRR8758896 | Pre-XDR-TB | lineage4.1.1.3 | None |
ERR11082656 | MDR-TB | lineage4.3.4.1 | None |
ERR9120141 | MDR-TB | lineage4.3.3 | None |
SRR1167335 | MDR-TB | lineage4.3.3 | None |
ERR13264948 | Pre-XDR-TB | lineage4.2.2.2 | None |
ERR2307590 | MDR-TB | lineage2.2.1 | None |
SRR29231695 | MDR-TB | lineage4.3.2 | None |
ERR13267145 | MDR-TB | lineage2.2.1 | None |
SRR833172 | MDR-TB | lineage4.3.2.1 | None |
SRR29017679 | Pre-XDR-TB | lineage4.1.1.1 | None |
ERR13284650 | MDR-TB | lineage4.1.2.1 | None |
ERR9120140 | MDR-TB | lineage4.3.3 | None |
SRR29231774 | MDR-TB | lineage4.3.2 | None |
ERR13284608 | MDR-TB | lineage2.2.1 | None |
SRR5065610 | MDR-TB | lineage2.2.1 | vn |
ERR9993022 | XDR-TB | lineage4.4.1.1 | None |
ERR4423611 | Pre-XDR-TB | lineage4.3.2 | None |
ERR13289028 | Pre-XDR-TB | lineage4.1.1.3 | None |
ERR5865209 | MDR-TB | lineage2.2.1 | None |
ERR2120248 | MDR-TB | lineage4.6.5 | None |
ERR4813770 | MDR-TB | lineage4.3.4.1 | br |
ERR13284494 | MDR-TB | lineage2.2.1 | None |
ERR8665634 | Pre-XDR-TB | lineage2.2.1 | None |
SRR7755751 | MDR-TB | lineage4.2.1 | None |
SRR29231666 | MDR-TB | lineage4.3.2 | None |
ERR13267126 | Pre-XDR-TB | lineage4.8 | None |
SRR1173131 | Pre-XDR-TB | lineage2.2.1 | None |
SRR998837 | MDR-TB | lineage4.1.3 | None |
SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None |
ERR9907773 | MDR-TB | lineage4.4.1.1 | None |
ERR9119631 | MDR-TB | lineage4.6.2.2 | None |
ERR4819109 | Pre-XDR-TB | lineage4 | gb |
ERR4799182 | Pre-XDR-TB | lineage4.8 | in |
SAMN02231187 | MDR-TB | lineage4.1.3 | None |
ERR13284925 | MDR-TB | lineage4.1.2.1 | None |
SRR3085354 | MDR-TB | lineage4.3.2 | None |
ERR6362445 | MDR-TB | lineage4.3.3 | None |
SRR1173875 | Pre-XDR-TB | lineage2.2.1 | None |
SRR28351377 | MDR-TB | lineage2.2.1 | None |
SAMN02628505 | Pre-XDR-TB | lineage2.2.1 | ir |
SRR1165716 | MDR-TB | lineage4.3.3 | None |
SRR1173192 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2307580 | MDR-TB | lineage2.2.1 | None |
ERR4831957 | MDR-TB | lineage2.2.1 | vn |
SRR13120450 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4383951 | MDR-TB | lineage4.3.2 | None |
SRR3082119 | MDR-TB | lineage4.3.2 | None |
SRR29231754 | MDR-TB | lineage4.3.2 | None |
ERR4423613 | Pre-XDR-TB | lineage4.3.2 | None |
DRR130104 | Pre-XDR-TB | lineage2.2.2 | None |
SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None |
SRR10380073 | MDR-TB | lineage4.2.1 | None |
SRR29231567 | MDR-TB | lineage4.3.2 | None |
SRR11033736 | MDR-TB | lineage2.2.1 | None |
ERR1034903 | Pre-XDR-TB | lineage4.3.4.2 | pt |
SRR6964501 | Pre-XDR-TB | lineage4.2.2.2 | None |
SRR2024909 | MDR-TB | lineage2.2.1 | cn |
ERR4423617 | Pre-XDR-TB | lineage4.3.2 | None |
ERR7911310 | MDR-TB | lineage2.2.1.1 | vn |
ERR7911311 | MDR-TB | lineage2.2.1.1 | vn |
SRR25207140 | RR-TB | lineage2.2.1 | None |
SRR25206921 | MDR-TB | lineage4.5 | None |
SRR25827874 | MDR-TB | lineage4.8 | None |
SRR21576614 | MDR-TB | lineage4.5 | None |
ERR11083163 | MDR-TB | lineage4.1.2.1 | None |
SRR847803 | Pre-XDR-TB | lineage4.1.1.3 | za |
ERR7362026 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9806688 | MDR-TB | lineage4.1.2.1 | None |
ERR4813470 | MDR-TB | lineage4.1.2.1 | pe |
ERR8665822 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9992988 | XDR-TB | lineage4.1.1.3 | None |
ERR4872225 | MDR-TB | lineage4.6.2.2 | None |
ERR5866162 | MDR-TB | lineage2.2.1 | None |
ERR9119491 | MDR-TB | lineage4.6.2.2 | None |
SRR28351576 | MDR-TB | lineage4.8 | None |
SRR21887740 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813950 | Pre-XDR-TB | lineage4.8 | br |
ERR2307429 | MDR-TB | lineage2.2.1 | None |
ERR2514155 | HR-TB | lineage4.1.1.3 | gb |
ERR9907672 | MDR-TB | lineage4.4.1.1 | None |
ERR4872184 | MDR-TB | lineage4.6.2.2 | None |
SRR833091 | MDR-TB | lineage4.3.2.1 | None |