ERR4797483
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4872239
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4829697
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR2706946
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR775386
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR5065610
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR7911628
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR13355778
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2707118
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR2120248
|
MDR-TB
|
lineage4.6.5
|
None
|
ERR4972542
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4423618
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR2707093
|
MDR-TB
|
lineage4.3.2
|
cd
|
SRR13232461
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29289200
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR1173131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR998837
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR9907773
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4819109
|
Pre-XDR-TB
|
lineage4
|
gb
|
ERR13284650
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02231187
|
MDR-TB
|
lineage4.1.3
|
None
|
DRR130105
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR3085354
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4872085
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR16088252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033731
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9286037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907800
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13284591
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173875
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284608
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829996
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29231666
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR7911310
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SAMN02628505
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
ERR4796946
|
MDR-TB
|
lineage4.8
|
in
|
SRR1165716
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831957
|
MDR-TB
|
lineage2.2.1
|
vn
|
DRR130104
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360562
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR10380073
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6079962
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR25827402
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
ERR4798833
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SAMN02231164
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4553886
|
Pre-XDR-TB
|
|
None
|
ERR1034680
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.3.4.1
|
co
|
SRR28393392
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR28394250
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR6964501
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR2516663
|
Pre-XDR-TB
|
lineage4.1.1.3
|
pe
|
ERR13289023
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11243550
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828953
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR25207140
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5865207
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN01925647
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25827430
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR2516598
|
Pre-XDR-TB
|
lineage4.1.1
|
pe
|
ERR9119582
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR21576614
|
MDR-TB
|
lineage4.5
|
None
|
SRR1167373
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173793
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2707032
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR7362026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907733
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1169200
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4831931
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5865206
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806688
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813470
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR8665822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992988
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911311
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR12420601
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800367
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
in
|
SRR1577811
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4797720
|
XDR-TB
|
lineage3
|
in
|
ERR9119480
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR5866160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119491
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4800625
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25827749
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SRR28351576
|
MDR-TB
|
lineage4.8
|
None
|
SRR21887740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307429
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510472
|
MDR-TB
|
lineage3
|
pk
|
SAMN02628504
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
ERR13264955
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR3724660
|
MDR-TB
|
lineage4.3.2
|
cd
|
SAMN02403572
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR998839
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR671825
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR1213837
|
RR-TB
|
lineage4.9
|
kr
|
ERR4813217
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR11798544
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29231851
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR5865051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260672
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR20969356
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049042
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR1013565
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR11082656
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4799867
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR833172
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR2706937
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR2706965
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR9993022
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR10380010
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4423611
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR4813770
|
MDR-TB
|
lineage4.3.4.1
|
br
|
ERR4797669
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR29231866
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR29289202
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR8665634
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3724807
|
MDR-TB
|
lineage4.1.3
|
ci
|
ERR8665907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755751
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR25827780
|
XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR3078000
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR9119631
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR13284494
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516547
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR17406769
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR13232575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2707115
|
MDR-TB
|
lineage4.3.3
|
cd
|
SRR29093317
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR1013566
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR11033736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6358715
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4828053
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29230787
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR29289201
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR3797014
|
Other
|
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
SRR3082126
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02403573
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR998787
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR7911423
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR11798712
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR7755756
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28044699
|
MDR-TB
|
lineage4.9
|
None
|
ERR5865052
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510579
|
MDR-TB
|
lineage4.2.2.2
|
pk
|
ERR2510623
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR2706963
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR13291056
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13267145
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206921
|
MDR-TB
|
lineage4.5
|
None
|
SRR25827874
|
MDR-TB
|
lineage4.8
|
None
|
ERR2307646
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865660
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10040490
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR11080834
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393411
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2706918
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR3132106
|
MDR-TB
|
lineage4.4
|
None
|
ERR9907674
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10397204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR847803
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR13285063
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR2679262
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR23310891
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707164
|
MDR-TB
|
lineage4.3.2
|
cd
|
SRR13870408
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4872225
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4796864
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR10680095
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13284346
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2514155
|
HR-TB
|
lineage4.1.1.3
|
gb
|
SRR998785
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4872184
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR29231853
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR1577823
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR2707140
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR11243552
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393577
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02053796
|
MDR-TB
|
lineage4.3.2.1
|
za
|
ERR1873448
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR1048866
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR2707105
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
SRR1167335
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2307590
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR998838
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4831898
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510864
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4872074
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR5865208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707016
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR1193661
|
MDR-TB
|
lineage4.3.2
|
ao
|
SRR7646030
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5865209
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165662
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831886
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR924218
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8975717
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4799182
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR5866116
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR998786
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR1199134
|
RR-TB
|
lineage4.6.1.2
|
ug
|
ERR6362445
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865053
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351377
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1367219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173192
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307580
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865659
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10748537
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13120450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4383951
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR3082119
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR1034903
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR8651597
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6511616
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR5866161
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552432
|
MDR-TB
|
lineage4.1.3
|
cg
|
ERR11775983
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR2510246
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4423617
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR29055675
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093631
|
MDR-TB
|
lineage4.9.1
|
None
|
SRR29231567
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR11083163
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1049043
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR2510851
|
MDR-TB
|
lineage4.3.2
|
it
|
SRR998840
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR13266943
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR552431
|
MDR-TB
|
lineage4.1.3
|
cg
|
SRR17657935
|
RR-TB
|
lineage4.9
|
None
|
ERR4828844
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR13258384
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10525349
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR2024909
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR5865050
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592341
|
MDR-TB
|
lineage4.7
|
None
|
ERR5866162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872206
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SAMN02360602
|
MDR-TB
|
lineage4.4.2
|
kr
|
SRR1169216
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172275
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4872205
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR25827799
|
XDR-TB
|
lineage4.8
|
None
|
SRR29231717
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29230789
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7645858
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1013646
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR1013647
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR13289028
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25827345
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
ERR6362755
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29017219
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4813950
|
Pre-XDR-TB
|
lineage4.8
|
br
|
SRR29231774
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR8665633
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907672
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR13870398
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9119619
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR833091
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR3085360
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28045706
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13289375
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR15316302
|
RR-TB
|
lineage4.4.2
|
None
|
ERR2510527
|
MDR-TB
|
lineage4.2.2.2
|
pk
|
SRR28393855
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28498687
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11488459
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4423612
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR11081307
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9286038
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2864254
|
MDR-TB
|
lineage4.3.4.1
|
pt
|
ERR4799754
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR11773706
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR25827306
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28706614
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR7755665
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR987759
|
RR-TB
|
lineage4.6.1.2
|
None
|
SRR998784
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR1048865
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR8758896
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2707034
|
MDR-TB
|
lineage4.3.2
|
cd
|
ERR9120141
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3132289
|
RR-TB
|
lineage4.9
|
None
|