Rv3806c - p.Met180Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
7 RR-TB
5 HR-TB
185 MDR-TB
99 Pre-XDR-TB
9 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 69 |
| lineage4.8 | 20 |
| lineage4.3.2 | 32 |
| lineage4.3.3 | 26 |
| lineage2.2.2 | 4 |
| lineage4.2.1 | 6 |
| lineage4.1.3 | 17 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage4.3.4.1 | 9 |
| lineage4.9 | 6 |
| lineage4.4.2 | 11 |
| lineage4.1.2.1;lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 16 |
| lineage4.1.2.1 | 14 |
| lineage4 | 4 |
| lineage4.4 | 1 |
| lineage4.6.2.2 | 13 |
| lineage4.5 | 3 |
| lineage4.7 | 1 |
| lineage4.4.1.1 | 5 |
| lineage4.3.2.1 | 4 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.6.5 | 1 |
| lineage4.2.2.2 | 9 |
| lineage3 | 3 |
| lineage4.9.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| 1 | |
| lineage4.6.1.2 | 5 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.4.2 | 4 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage3.1 | 1 |
| lineage4.1.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 306 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10748537 | MDR-TB | lineage2.2.1 | None | ERR4798833 | Pre-XDR-TB | lineage4.8 | in | SRR13120450 | Pre-XDR-TB | lineage2.2.1 | None | ERR4383951 | MDR-TB | lineage4.3.2 | None | SRR3082119 | MDR-TB | lineage4.3.2 | None | SRR29231754 | MDR-TB | lineage4.3.2 | None | ERR4799557 | MDR-TB | lineage4.3.3 | in | DRR130104 | Pre-XDR-TB | lineage2.2.2 | None | SRR10380073 | MDR-TB | lineage4.2.1 | None | SRR29231567 | MDR-TB | lineage4.3.2 | None | SRR11033736 | MDR-TB | lineage2.2.1 | None | ERR4799867 | Pre-XDR-TB | lineage4.8 | in | SRR1577825 | MDR-TB | lineage4.1.3 | None | ERR4800367 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | in | SRR25827402 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | ERR4828053 | MDR-TB | lineage2.2.1 | None | SRR6511616 | MDR-TB | lineage4.3.4.1 | None | ERR3132289 | RR-TB | lineage4.9 | None | ERR1213837 | RR-TB | lineage4.9 | kr | SRR29093317 | Pre-XDR-TB | lineage4.9 | None | SAMN02360602 | MDR-TB | lineage4.4.2 | kr | SRR17657935 | RR-TB | lineage4.9 | None | SAMN02403572 | MDR-TB | lineage4.3.3 | za | SRR671825 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5866161 | MDR-TB | lineage2.2.1 | None | SRR7755756 | Pre-XDR-TB | lineage4.3.3 | None | ERR1034680 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.1 | co | SRR28393392 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665906 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665907 | Pre-XDR-TB | lineage2.2.1 | None | ERR2706965 | MDR-TB | lineage4.3.4.1 | cd | ERR2707115 | MDR-TB | lineage4.3.3 | cd | ERR4813470 | MDR-TB | lineage4.1.2.1 | pe | ERR4831957 | MDR-TB | lineage2.2.1 | vn | ERR4828953 | Pre-XDR-TB | lineage4 | None | ERR775386 | MDR-TB | lineage4.1.2.1 | pe | ERR8665822 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080834 | MDR-TB | lineage2.2.1 | None | SRR28393411 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3132106 | MDR-TB | lineage4.4 | None | ERR9119582 | MDR-TB | lineage4.6.2.2 | None | SRR21576614 | MDR-TB | lineage4.5 | None | ERR11083163 | MDR-TB | lineage4.1.2.1 | None | SRR1167373 | MDR-TB | lineage4.3.3 | None | SRR1173793 | Pre-XDR-TB | lineage2.2.1 | None | SRR847803 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR1169200 | HR-TB | lineage4.3.3 | None | ERR9806688 | MDR-TB | lineage4.1.2.1 | None | SRR3724807 | MDR-TB | lineage4.1.3 | ci | SRR7592341 | MDR-TB | lineage4.7 | None | ERR5866162 | MDR-TB | lineage2.2.1 | None | ERR4872206 | MDR-TB | lineage4.6.2.2 | None | SRR1577811 | MDR-TB | lineage4.1.3 | None | SRR1169216 | MDR-TB | lineage4.3.3 | None | ERR4872205 | MDR-TB | lineage4.6.2.2 | None | ERR10680095 | MDR-TB | lineage4.1.2.1 | None | ERR9119480 | MDR-TB | lineage4.6.2.2 | None | SRR1013646 | MDR-TB | lineage4.4.2 | None | SRR1013647 | MDR-TB | lineage4.4.2 | None | ERR4796864 | Pre-XDR-TB | lineage4.8 | in | ERR2307429 | MDR-TB | lineage2.2.1 | None | ERR9907672 | MDR-TB | lineage4.4.1.1 | None | SRR13870398 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR998785 | MDR-TB | lineage4.1.3 | None | ERR9119619 | MDR-TB | lineage4.6.2.2 | None | ERR4831886 | MDR-TB | lineage2.2.1 | vn | SRR15316302 | RR-TB | lineage4.4.2 | None | SRR998839 | MDR-TB | lineage4.1.3 | None | SRR1577823 | MDR-TB | lineage4.1.3 | None | ERR11488459 | MDR-TB | lineage4.3.3 | None | ERR4423612 | Pre-XDR-TB | lineage4.3.2 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR833172 | MDR-TB | lineage4.3.2.1 | None | SRR998838 | MDR-TB | lineage4.1.3 | None | SRR29093952 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017679 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR4872239 | MDR-TB | lineage4.6.2.2 | None | ERR4872074 | MDR-TB | lineage4.6.2.2 | None | ERR4829697 | Pre-XDR-TB | lineage4 | None | ERR9993022 | XDR-TB | lineage4.4.1.1 | None | SRR10380010 | MDR-TB | lineage4.2.1 | None | SRR1169276 | MDR-TB | lineage4.3.3 | None | SRR13355778 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29094084 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2120248 | MDR-TB | lineage4.6.5 | None | ERR13284494 | MDR-TB | lineage2.2.1 | None | SRR1165662 | MDR-TB | lineage4.3.3 | None | SRR29230788 | MDR-TB | lineage4.3.2 | None | SRR7755751 | MDR-TB | lineage4.2.1 | None | SRR29231666 | MDR-TB | lineage4.3.2 | None | SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None | ERR9907773 | MDR-TB | lineage4.4.1.1 | None | ERR3078000 | MDR-TB | lineage4.2.2.2 | None | ERR9119631 | MDR-TB | lineage4.6.2.2 | None | DRR130105 | Pre-XDR-TB | lineage2.2.2 | None | SRR3085354 | MDR-TB | lineage4.3.2 | None | ERR4872085 | MDR-TB | lineage4.6.2.2 | None | SRR16088252 | MDR-TB | lineage2.2.1 | None | SRR11033731 | MDR-TB | lineage2.2.1 | None | SRR8758896 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29231717 | MDR-TB | lineage4.3.4.1 | None | SRR17406769 | Pre-XDR-TB | lineage4.8 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR4829996 | MDR-TB | lineage4.6.2.2 | None | ERR13258384 | Pre-XDR-TB | lineage2.2.2 | None | SRR29289202 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2510472 | MDR-TB | lineage3 | pk | SRR6964501 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29289200 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1367219 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1173192 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799182 | Pre-XDR-TB | lineage4.8 | in | ERR2307580 | MDR-TB | lineage2.2.1 | None | SRR29230789 | MDR-TB | lineage4.3.3 | None | SRR29231756 | MDR-TB | lineage4.3.2 | None | SRR29231866 | MDR-TB | lineage4.3.2 | None | SRR29093631 | MDR-TB | lineage4.9.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3082126 | MDR-TB | lineage4.3.3 | None | SRR998787 | MDR-TB | lineage4.1.3 | None | ERR4813770 | MDR-TB | lineage4.3.4.1 | br | ERR4553886 | Pre-XDR-TB | None | ERR4423617 | Pre-XDR-TB | lineage4.3.2 | None | ERR7911310 | MDR-TB | lineage2.2.1.1 | vn | ERR7911311 | MDR-TB | lineage2.2.1.1 | vn | ERR2707016 | MDR-TB | lineage4.6.1.2 | cd | ERR2706918 | MDR-TB | lineage4.3.2 | cd | ERR2707164 | MDR-TB | lineage4.3.2 | cd | ERR2707093 | MDR-TB | lineage4.3.2 | cd | ERR2706946 | MDR-TB | lineage4.3.2 | cd | ERR2707034 | MDR-TB | lineage4.3.2 | cd | ERR2707032 | MDR-TB | lineage4.3.2 | cd | ERR2707140 | MDR-TB | lineage4.3.2 | cd | ERR2707105 | MDR-TB | lineage4.3.4.1 | cd | ERR2706937 | MDR-TB | lineage4.3.2 | cd | ERR2706963 | MDR-TB | lineage4.3.2 | cd | ERR2707118 | MDR-TB | lineage4.3.2 | cd | ERR7911423 | MDR-TB | lineage2.2.1 | us | ERR7911628 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR11243550 | MDR-TB | lineage2.2.1 | None | ERR4828844 | Pre-XDR-TB | lineage4 | None | ERR4831898 | MDR-TB | lineage2.2.1 | None | SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR9907674 | MDR-TB | lineage4.4.1.1 | None | ERR1199134 | RR-TB | lineage4.6.1.2 | ug | ERR552432 | MDR-TB | lineage4.1.3 | cg | ERR552431 | MDR-TB | lineage4.1.3 | cg | ERR2679262 | MDR-TB | lineage4.1.3 | None | ERR1873448 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2514155 | HR-TB | lineage4.1.1.3 | gb | SRR1049043 | MDR-TB | lineage4.4.2 | None | ERR9907733 | MDR-TB | lineage4.1.1.3 | None | ERR5865206 | MDR-TB | lineage2.2.1 | None | SRR3724660 | MDR-TB | lineage4.3.2 | cd | SRR10525349 | Pre-XDR-TB | lineage4.8 | None | SRR23310891 | MDR-TB | lineage2.2.1 | None | ERR5865050 | MDR-TB | lineage2.2.1 | None | SRR13870408 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR12420601 | MDR-TB | lineage2.2.1 | None | SRR1172275 | MDR-TB | lineage4.3.3 | None | SRR25827799 | XDR-TB | lineage4.8 | None | ERR5866160 | MDR-TB | lineage2.2.1 | None | SRR25827345 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | ERR4800625 | Pre-XDR-TB | lineage4.8 | None | ERR13289375 | Pre-XDR-TB | lineage4.9 | None | SRR25827749 | XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR13289023 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2510851 | MDR-TB | lineage4.3.2 | it | SRR21887740 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872184 | MDR-TB | lineage4.6.2.2 | None | SRR833091 | MDR-TB | lineage4.3.2.1 | None | SRR3085360 | MDR-TB | lineage4.3.3 | None | SRR28045706 | Pre-XDR-TB | lineage4.8 | None | SRR28393855 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11243552 | MDR-TB | lineage2.2.1 | None | SRR28393577 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813217 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR987759 | RR-TB | lineage4.6.1.2 | None | SAMN02053796 | MDR-TB | lineage4.3.2.1 | za | SRR1049042 | MDR-TB | lineage4.4.2 | None | SRR998784 | MDR-TB | lineage4.1.3 | None | SRR29273777 | Pre-XDR-TB | lineage4.8 | None | ERR13284346 | MDR-TB | lineage2.2.1 | None | ERR2307590 | MDR-TB | lineage2.2.1 | None | ERR13267145 | MDR-TB | lineage2.2.1 | None | ERR5865208 | MDR-TB | lineage2.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SRR7646030 | MDR-TB | lineage4.2.1 | None | ERR5865209 | MDR-TB | lineage2.2.1 | None | ERR8665634 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173131 | Pre-XDR-TB | lineage2.2.1 | None | SRR998837 | MDR-TB | lineage4.1.3 | None | SAMN02231187 | MDR-TB | lineage4.1.3 | None | ERR5866116 | MDR-TB | lineage2.2.1 | None | ERR13284925 | MDR-TB | lineage4.1.2.1 | None | SRR998786 | MDR-TB | lineage4.1.3 | None | SRR29230787 | MDR-TB | lineage4.3.2 | None | ERR5865053 | MDR-TB | lineage2.2.1 | None | ERR2510623 | Pre-XDR-TB | lineage3.1 | pk | ERR2510527 | MDR-TB | lineage4.2.2.2 | pk | ERR2510579 | MDR-TB | lineage4.2.2.2 | pk | SRR28351377 | MDR-TB | lineage2.2.1 | None | SRR29289201 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2510246 | Pre-XDR-TB | lineage3 | pk | ERR13261476 | MDR-TB | lineage4.8 | None | ERR5865659 | MDR-TB | lineage4.3.3 | None | ERR1034903 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR13284591 | MDR-TB | lineage2.2.1 | None | ERR13284523 | MDR-TB | lineage2.2.1 | None | ERR4796946 | MDR-TB | lineage4.8 | in | SRR28044699 | MDR-TB | lineage4.9 | None | ERR6358715 | MDR-TB | lineage4.6.1.2 | None | SAMN02403573 | MDR-TB | lineage4.3.3 | za | SAMN02628504 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628505 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02231164 | MDR-TB | lineage4.1.3 | None | SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2864254 | MDR-TB | lineage4.3.4.1 | pt | ERR4813950 | Pre-XDR-TB | lineage4.8 | br | ERR11798712 | Pre-XDR-TB | lineage4.2.1 | None | ERR5865052 | MDR-TB | lineage2.2.1 | None | SRR28394250 | MDR-TB | lineage4.1.1 | None | ERR11775983 | MDR-TB | lineage1.2.1.2.1 | None | ERR4831931 | MDR-TB | lineage2.2.1 | vn | SRR2024909 | MDR-TB | lineage2.2.1 | cn | SRR25207140 | RR-TB | lineage2.2.1 | None | SRR25206921 | MDR-TB | lineage4.5 | None | SRR25827874 | MDR-TB | lineage4.8 | None | ERR8975717 | XDR-TB | lineage4.1.1.3 | None | ERR2307646 | MDR-TB | lineage2.2.1 | None | ERR8975626 | HR-TB | lineage4.3.2.1 | None | ERR5865207 | MDR-TB | lineage2.2.1 | None | ERR5865660 | MDR-TB | lineage4.3.3 | None | SAMN01925647 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10040490 | Pre-XDR-TB | lineage4.5 | None | ERR1193661 | MDR-TB | lineage4.3.2 | ao | ERR2516547 | MDR-TB | lineage4.1.1 | pe | ERR2516598 | Pre-XDR-TB | lineage4.1.1 | pe | ERR2516663 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR4819109 | Pre-XDR-TB | lineage4 | gb | SRR10397204 | MDR-TB | lineage2.2.1 | None | SRR998840 | MDR-TB | lineage4.1.3 | None | ERR13266943 | Pre-XDR-TB | lineage4.8 | None | ERR7362026 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285063 | MDR-TB | lineage4.3.4.1 | None | SRR5065610 | MDR-TB | lineage2.2.1 | vn | ERR9992988 | XDR-TB | lineage4.1.1.3 | None | ERR4872225 | MDR-TB | lineage4.6.2.2 | None | SRR7645858 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119491 | MDR-TB | lineage4.6.2.2 | None | SRR28351576 | MDR-TB | lineage4.8 | None | ERR2510864 | MDR-TB | lineage4.1.2.1 | None | ERR4797669 | Pre-XDR-TB | lineage4.8 | in | ERR6362755 | MDR-TB | lineage4.3.3 | None | ERR4799754 | Pre-XDR-TB | lineage4.8 | in | ERR8665633 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289028 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28498687 | MDR-TB | lineage4.2.1 | None | ERR11081307 | MDR-TB | lineage4.1.2.1 | None | ERR9286038 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798544 | MDR-TB | lineage2.2.1 | None | SRR29231851 | MDR-TB | lineage4.3.4.1 | None | ERR11773706 | HR-TB | lineage4.1.1.3 | None | SRR29231853 | MDR-TB | lineage4.3.2 | None | ERR5865051 | MDR-TB | lineage2.2.1 | None | SRR25827306 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28706614 | MDR-TB | lineage4.2.1.1 | None | SRR20969356 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260672 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR7755665 | Pre-XDR-TB | lineage4.3.3 | None | SRR29056333 | MDR-TB | lineage4.3.4.2.1 | None | ERR11082656 | MDR-TB | lineage4.3.4.1 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR9120141 | MDR-TB | lineage4.3.3 | None | SRR1167335 | MDR-TB | lineage4.3.3 | None | ERR13264948 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29231695 | MDR-TB | lineage4.3.2 | None | SRR28239447 | MDR-TB | lineage2.2.1 | None | SRR29017219 | MDR-TB | lineage4.3.4.2 | None | ERR13284650 | MDR-TB | lineage4.1.2.1 | None | ERR9120140 | MDR-TB | lineage4.3.3 | None | SRR29231774 | MDR-TB | lineage4.3.2 | None | ERR13284608 | MDR-TB | lineage2.2.1 | None | ERR13275890 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423611 | Pre-XDR-TB | lineage4.3.2 | None | SRR29231762 | MDR-TB | lineage4.6.1.2 | None | SRR29055675 | MDR-TB | lineage4.3.3 | None | ERR4423613 | Pre-XDR-TB | lineage4.3.2 | None | ERR4972542 | MDR-TB | lineage4.3.2 | None | ERR4423618 | Pre-XDR-TB | lineage4.3.2 | None | SRR13232461 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267126 | Pre-XDR-TB | lineage4.8 | None | SRR924218 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13242984 | MDR-TB | lineage2.2.1 | None | ERR13291056 | Pre-XDR-TB | lineage2.2.2 | None | ERR13264955 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR9286037 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232575 | Pre-XDR-TB | lineage2.2.1 | None | ERR9907800 | MDR-TB | lineage4.4.1.1 | None | ERR6362445 | MDR-TB | lineage4.3.3 | None | SRR1173875 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797483 | Pre-XDR-TB | lineage4.8 | in | ERR4797720 | XDR-TB | lineage3 | in | SRR1165716 | MDR-TB | lineage4.3.3 | None |
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