Rv3854c - c.597delC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
45 MDR-TB
204 Pre-XDR-TB
33 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 275 |
| lineage4.1.1.3;lineage4.1.2 | 2 |
| lineage2.2.1.1;lineage4.1.1.3 | 1 |
| lineage2.2.2;lineage4.1.1.3 | 3 |
| lineage3;lineage4.1.1.3 | 1 |
| lineage4.1.1.3;lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 283 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9120110 | MDR-TB | lineage4.1.1.3 | None | ERR10748315 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056112 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869227 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094029 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096572 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096358 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025711 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025703 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093310 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094023 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093856 | MDR-TB | lineage4.1.1.3 | None | ERR5987307 | MDR-TB | lineage4.1.1.3 | None | ERR9119916 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056327 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096311 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093248 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156282 | XDR-TB | lineage4.1.1.3 | None | SRR10869213 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094084 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993218 | XDR-TB | lineage4.1.1.3 | None | SRR10851704 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | ERR4011939 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806866 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9807004 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112853 | XDR-TB | lineage4.1.1.3 | None | ERR13288935 | XDR-TB | lineage4.1.1.3 | None | ERR9992751 | XDR-TB | lineage4.1.1.3 | None | ERR10748424 | MDR-TB | lineage4.1.1.3 | None | SRR29055522 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6362206 | MDR-TB | lineage4.1.1.3 | None | ERR1034990 | MDR-TB | lineage4.1.1.3 | za | SRR10869158 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093550 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094059 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1035037 | MDR-TB | lineage4.1.1.3 | za | ERR8025662 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093458 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055798 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156200 | MDR-TB | lineage4.1.1.3 | None | SRR29093760 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748165 | XDR-TB | lineage4.1.1.3 | None | SRR29093456 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748448 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025490 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025508 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285252 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093193 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056301 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993065 | XDR-TB | lineage4.1.1.3 | None | SRR29093674 | MDR-TB | lineage4.1.1.3 | None | ERR9807010 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112861 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025628 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8975740 | XDR-TB | lineage4.1.1.3 | None | ERR8975742 | XDR-TB | lineage4.1.1.3 | None | ERR8975781 | XDR-TB | lineage4.1.1.3 | None | ERR8975785 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748144 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8975725 | MDR-TB | lineage4.1.1.3 | None | ERR1873550 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873546 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873540 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873554 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873448 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873462 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1873441 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515568 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515133 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515337 | XDR-TB | lineage4.1.1.3 | za | ERR1035061 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR9807014 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096406 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096562 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806910 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748491 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9120109 | MDR-TB | lineage4.1.1.3 | None | ERR8025592 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9807002 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1034641 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025435 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993264 | XDR-TB | lineage4.1.1.3 | None | ERR8025692 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869134 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289406 | XDR-TB | lineage4.1.1.3 | None | ERR4011942 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13288723 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112887 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13286195 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993088 | MDR-TB | lineage4.1.1.3 | None | ERR9993031 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992989 | XDR-TB | lineage4.1.1.3 | None | ERR9992746 | XDR-TB | lineage4.1.1.3 | None | ERR13288959 | MDR-TB | lineage4.1.1.3 | None | ERR9993219 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093524 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806966 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055562 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093813 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093245 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096883 | MDR-TB | lineage4.1.1.3 | None | ERR1873391 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096496 | MDR-TB | lineage4.1.1.3 | None | SRR16156719 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055839 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025573 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806880 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748353 | XDR-TB | lineage4.1.1.3 | None | ERR4011940 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096872 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093542 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156239 | MDR-TB | lineage4.1.1.3 | None | SRR29093662 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093967 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094031 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993083 | XDR-TB | lineage4.1.1.3 | None | ERR9807012 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093538 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748158 | XDR-TB | lineage4.1.1.3 | None | SRR10869284 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7362011 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093339 | MDR-TB | lineage4.1.1.3 | None | SRR16156243 | MDR-TB | lineage4.1.1.3 | None | ERR9806876 | MDR-TB | lineage4.1.1.3 | None | ERR9806944 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093974 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093268 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055524 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093443 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093862 | MDR-TB | lineage4.1.1.3 | None | SRR29093191 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4423566 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156738 | MDR-TB | lineage2.2.1.1;lineage4.1.1.3 | None | ERR9119915 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096200 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112890 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806925 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806931 | MDR-TB | lineage4.1.1.3 | None | SRR16156846 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992753 | XDR-TB | lineage4.1.1.3 | None | ERR11774973 | MDR-TB | lineage4.1.1.3 | None | ERR4808876 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911590 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911593 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911597 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911601 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911610 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911628 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911636 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | za | ERR9029384 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7911663 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911704 | MDR-TB | lineage4.1.1.3 | za | ERR2515546 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2515475 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR9806988 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093572 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112839 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156199 | MDR-TB | lineage4.1.1.3 | None | ERR9119744 | MDR-TB | lineage4.1.1.3 | None | ERR10748381 | MDR-TB | lineage3;lineage4.1.1.3 | None | ERR9806973 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1873418 | HR-TB | lineage4.1.1.3 | None | ERR4831561 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4831557 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.2.1 | None | SRR16156755 | MDR-TB | lineage4.1.1.3 | None | SRR29096852 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4423565 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993229 | XDR-TB | lineage4.1.1.3 | None | ERR13289046 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13286205 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992839 | XDR-TB | lineage4.1.1.3 | None | ERR13286099 | MDR-TB | lineage4.1.1.3 | None | ERR9993105 | XDR-TB | lineage4.1.1.3 | None | ERR9992833 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13288932 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869161 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156756 | MDR-TB | lineage4.1.1.3 | None | ERR10112889 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869239 | MDR-TB | lineage4.1.1.3 | None | ERR4011976 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093345 | MDR-TB | lineage4.1.1.3 | None | SRR29096345 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869197 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056305 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4831528 | MDR-TB | lineage4.1.1.3 | None | ERR4831558 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093333 | MDR-TB | lineage4.1.1.3 | None | ERR9806869 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1873400 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1873446 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285251 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156730 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055545 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156240 | MDR-TB | lineage4.1.1.3 | None | ERR8025664 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096577 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156859 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156716 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093113 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156747 | MDR-TB | lineage4.1.1.3 | None | SRR29231338 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993230 | XDR-TB | lineage4.1.1.3 | None | SRR29093183 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093327 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806953 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993216 | MDR-TB | lineage4.1.1.3 | None | ERR7361986 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156241 | MDR-TB | lineage4.1.1.3 | None | SRR29093427 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055594 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6362393 | MDR-TB | lineage4.1.1.3 | None | ERR7361987 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056277 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748318 | MDR-TB | lineage4.1.1.3 | None | ERR10748320 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993009 | XDR-TB | lineage4.1.1.3 | None | SRR29093580 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055939 | MDR-TB | lineage4.1.1.3 | None | SRR29093651 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR8758896 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4011941 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869234 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806952 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4011938 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9119693 | MDR-TB | lineage4.1.1.3 | None | ERR9806971 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093749 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806962 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806939 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055542 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093214 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1034639 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4808942 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR6362259 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7911585 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911596 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911637 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911677 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911675 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR7911684 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5918023 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5918039 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5918040 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR8975014 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806897 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025541 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025744 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9807000 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869164 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112843 | XDR-TB | lineage4.1.1.3 | None | SRR29093720 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025443 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | None | ERR8025698 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806997 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29056326 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16157097 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748522 | MDR-TB | lineage4.1.1.3 | None | ERR9806899 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289299 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806888 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289296 | MDR-TB | lineage4.1.1.3 | None | ERR6362771 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13289331 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993208 | XDR-TB | lineage4.1.1.3 | None | ERR9992998 | XDR-TB | lineage4.1.1.3 | None | ERR9992974 | XDR-TB | lineage4.1.1.3 | None | ERR9993209 | XDR-TB | lineage4.1.1.3 | None | ERR13288961 | XDR-TB | lineage4.1.1.3 | None | ERR13289008 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | None | ERR9993114 | XDR-TB | lineage4.1.1.3 | None | ERR10112837 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112840 | XDR-TB | lineage4.1.1.3 | None | SRR10869252 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16156687 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9806985 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869214 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748150 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10748485 | XDR-TB | lineage4.1.1.3 | None | ERR4011943 | Pre-XDR-TB | lineage4.1.1.3 | None |
|---|
