SRR29274216
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232551
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165540
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28646114
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5865276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267502
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257033
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR29273949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24255876
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290278
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5266560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863938
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539853
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419550
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR29273860
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273739
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828130
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807586
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15901697
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665880
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1169077
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276342
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865801
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273826
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665839
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166327
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865247
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276302
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798568
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866073
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592335
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310888
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7517722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273918
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232463
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866565
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539586
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864539
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274775
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3544743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273779
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163303
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864532
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872353
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665993
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2677445
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR13284627
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538928
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310881
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910948
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR11082366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284836
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458435
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419604
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR6458407
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801312
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067605
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR5863933
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865700
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180944
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822326
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR5863926
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864534
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866557
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307474
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159167
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232785
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828100
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7341676
|
MDR-TB
|
lineage2.2.1
|
ro
|
SRR24255947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2200138
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR13312546
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864533
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043590
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822317
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR5864540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863920
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6484901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865278
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28240064
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310901
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351396
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165535
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864559
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169113
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082934
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865296
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419545
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR10380243
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13312517
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419643
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR1162532
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911408
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR8665906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159369
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043589
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28646091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR144558
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR13232663
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539262
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR229961
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR7911248
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4828073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762231
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863919
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158890
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172345
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910961
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR8665848
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02086224
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419559
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR10762310
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762342
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR1159359
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646059
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681333
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284664
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864537
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539284
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284599
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159075
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181114
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419535
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR29273864
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665651
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865455
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184039
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665671
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3544729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284168
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864833
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28240043
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR29539633
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2199837
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR29127089
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290279
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866564
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082996
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034893
|
MDR-TB
|
lineage2.2.1
|
pt
|
ERR8665634
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798564
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864860
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865772
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781874
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15901695
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273721
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7517736
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798560
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273752
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6662372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24466792
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865771
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866556
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714965
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292541
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276912
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8428950
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864531
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284133
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539620
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865993
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539416
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232776
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11049592
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356965
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081060
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13312518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166916
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232550
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257025
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR28239991
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539498
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539848
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181069
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539200
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292562
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510654
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR7516344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159298
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181206
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866592
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273681
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865277
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865727
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865783
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24255918
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865746
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274195
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181141
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755674
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181095
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801729
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801724
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284529
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865248
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864865
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516893
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR9121747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863923
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082813
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864850
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23340061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865271
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865458
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498636
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773810
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6256972
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351218
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498673
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773789
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822402
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
ERR4822297
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR4822323
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR8665562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665652
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639772
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4821107
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9738516
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419543
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR18715326
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829406
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR4829549
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR5864561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356687
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232534
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256101
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743406
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10869423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273944
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4821523
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR2510684
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR29539110
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033729
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9738520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9738515
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11033644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715406
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082359
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715039
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5761429
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865802
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256130
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403227
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169093
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2199818
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR5863937
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232719
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865273
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR108510
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR108469
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR13290281
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166104
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273921
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13281472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831235
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665988
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR18714962
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5486879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273709
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02584676
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR11082449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13259979
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539120
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274200
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830146
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5266539
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284143
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798562
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285804
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356994
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088427
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290280
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082275
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863939
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274188
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6807720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827559
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13285850
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285012
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864854
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273882
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865844
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5866074
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397140
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163037
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665757
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681272
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516138
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285015
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677430
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR403224
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159338
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088339
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310929
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081170
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822601
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR13430445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865279
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29356796
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538887
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081510
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762271
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762320
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162741
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4195619
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232660
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5152909
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414851
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR5864852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646052
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274213
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR24222950
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088580
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR958495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516779
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR5863935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865835
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539427
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11080868
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865343
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159005
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159175
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28646095
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5153311
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863928
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516749
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR23340036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665884
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180958
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11083165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181158
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802160
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6485061
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639762
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639792
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762496
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539082
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911385
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR11773792
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23938678
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13312545
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539771
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516788
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR14781959
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166932
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762451
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863918
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257085
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR7911397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807671
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865295
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11067641
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865293
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831761
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827998
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863927
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773806
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665633
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23340107
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419582
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5865845
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23340148
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082726
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865784
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865881
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380086
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR7911395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592373
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162504
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181125
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370524
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088581
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517108
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR18714959
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864856
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911407
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR18715137
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2200137
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866593
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863916
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181110
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517032
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR1181153
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044940
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13312520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11083027
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284100
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088048
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284744
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12307396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276910
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1158929
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273675
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665788
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4818871
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284040
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11049782
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1768638
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR13232524
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10525317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273868
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510869
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR9738541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5486885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864536
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539310
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782199
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4407558
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414859
|
MDR-TB
|
lineage2.2.1
|
se
|
SRR16088407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865456
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380125
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24222955
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419586
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5865294
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243528
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284628
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10397162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232522
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13430440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13430444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863932
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351616
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR8665765
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832110
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1768629
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR14782122
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181151
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584634
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR10379929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232717
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864562
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088545
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380238
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911748
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR5865253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865884
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639796
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9738542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5863924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419574
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SAMN02419641
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR10397096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755717
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284371
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863931
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865987
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600605
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082345
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133984
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR1181157
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310973
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802270
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166864
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865272
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592345
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11049757
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153820
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351321
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865728
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755757
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR16088475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082136
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273872
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088456
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310862
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10525340
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15901691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665593
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043834
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802272
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538879
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865882
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165563
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822403
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
SRR6257045
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159779
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832461
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681469
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867532
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539020
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2199836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9738513
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917746
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5863917
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539191
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7646019
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273791
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.4.1.1
|
None
|