Rv3854c - p.Leu348Phe
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
211 Sensitive
4 RR-TB
38 HR-TB
29 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 285 |
| lineage1.1.2;lineage3 | 3 |
| lineage1.1.2;lineage2.2.1 | 1 |
| lineage1.1.2;lineage3.1.1 | 3 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage3.1.2 | 1 |
| lineage1.1.2;lineage4.8 | 1 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 297 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180488 | MDR-TB | lineage1.1.2 | None | SRR11348162 | Sensitive | lineage1.1.2 | None | ERR13266431 | Sensitive | lineage1.1.2 | None | SRR22250092 | HR-TB | lineage1.1.2 | None | SRR21733138 | Sensitive | lineage1.1.2 | None | SRR29231243 | Sensitive | lineage1.1.2 | None | ERR4818333 | Sensitive | lineage1.1.2 | None | SRR1183160 | HR-TB | lineage1.1.2 | None | ERR13290037 | Sensitive | lineage1.1.2 | None | SRR25340822 | Sensitive | lineage1.1.2 | None | SRR1180210 | Sensitive | lineage1.1.2 | None | ERR13272805 | Sensitive | lineage1.1.2 | None | SRR1172293 | Sensitive | lineage1.1.2 | None | SRR21732781 | Sensitive | lineage1.1.2 | None | SRR6964638 | MDR-TB | lineage1.1.2 | None | SRR6964511 | Sensitive | lineage1.1.2 | None | SRR22249529 | Sensitive | lineage1.1.2 | None | SRR18149454 | Sensitive | lineage1.1.2 | None | SRR18149492 | Sensitive | lineage1.1.2 | None | SRR6964556 | RR-TB | lineage1.1.2;lineage3 | None | SRR28045168 | Sensitive | lineage1.1.2 | None | ERR4796268 | Sensitive | lineage1.1.2 | None | SRR6964485 | Sensitive | lineage1.1.2;lineage3 | None | SRR10500312 | Pre-XDR-TB | lineage1.1.2 | None | ERR4796494 | Sensitive | lineage1.1.2 | None | SRR6964564 | Sensitive | lineage1.1.2 | None | SRR29289140 | MDR-TB | lineage1.1.2 | None | SRR21732832 | Sensitive | lineage1.1.2 | None | SRR29289250 | MDR-TB | lineage1.1.2 | None | ERR270803 | HR-TB | lineage1.1.2 | None | SRR29230948 | Sensitive | lineage1.1.2 | None | ERR4798628 | Sensitive | lineage1.1.2 | in | ERR4796349 | RR-TB | lineage1.1.2 | None | SRR1180508 | Sensitive | lineage1.1.2 | None | SRR29772407 | MDR-TB | lineage1.1.2 | None | SRR28868340 | Other | lineage1.1.2 | None | SRR1172300 | Sensitive | lineage1.1.2 | None | SRR29231477 | Sensitive | lineage1.1.2 | None | ERR4800160 | HR-TB | lineage1.1.2 | None | SAMN02598959 | HR-TB | lineage1.1.2 | in | SRR1180479 | Sensitive | lineage1.1.2 | None | SAMN02598962 | Sensitive | lineage1.1.2 | in | SRR25827495 | MDR-TB | lineage1.1.2;lineage2.2.1 | None | SAMN02599026 | MDR-TB | lineage1.1.2 | in | SAMN02599022 | Sensitive | lineage1.1.2 | in | SAMN02599038 | Sensitive | lineage1.1.2 | in | SAMN02599160 | Sensitive | lineage1.1.2 | in | SAMN02599019 | HR-TB | lineage1.1.2 | in | SAMN02599035 | HR-TB | lineage1.1.2 | in | SRR8380918 | Sensitive | lineage1.1.2 | in | SRR28044766 | HR-TB | lineage1.1.2 | None | SRR28351369 | Sensitive | lineage1.1.2 | None | SRR28046318 | Sensitive | lineage1.1.2 | None | SRR28044316 | Sensitive | lineage1.1.2 | None | SRR18149497 | Sensitive | lineage1.1.2 | None | SRR28045075 | Sensitive | lineage1.1.2 | None | SRR6442532 | Sensitive | lineage1.1.2 | None | SRR28046288 | Sensitive | lineage1.1.2 | None | SRR28045066 | Sensitive | lineage1.1.2 | None | ERR4831463 | MDR-TB | lineage1.1.2 | None | ERR4820240 | Sensitive | lineage1.1.2 | None | SRR8380914 | Other | lineage1.1.2 | in | SRR22251582 | Sensitive | lineage1.1.2 | None | ERR4814489 | Sensitive | lineage1.1.2 | gb | ERR4815672 | Sensitive | lineage1.1.2 | gb | ERR4818928 | Sensitive | lineage1.1.2 | gb | ERR4818969 | Sensitive | lineage1.1.2 | gb | ERR2512771 | Sensitive | lineage1.1.2 | gb | SRR6367399 | MDR-TB | lineage1.1.2 | au | ERR9657181 | Sensitive | lineage1.1.2 | None | SRR1183032 | Sensitive | lineage1.1.2 | None | SRR28044500 | Sensitive | lineage1.1.2 | None | SRR19428622 | Sensitive | lineage1.1.2 | None | SRR22249816 | Sensitive | lineage1.1.2 | None | SRR28045432 | Sensitive | lineage1.1.2 | None | ERR7902664 | Sensitive | lineage1.1.2 | None | SRR1169476 | Sensitive | lineage1.1.2 | None | ERR9901856 | Sensitive | lineage1.1.2 | None | ERR4797782 | Sensitive | lineage1.1.2 | in | SRR7070203 | HR-TB | lineage1.1.2 | None | ERR13093910 | Sensitive | lineage1.1.2 | None | ERR202404 | Sensitive | lineage1.1.2 | None | ERR9125904 | Sensitive | lineage1.1.2 | None | ERR9657178 | Sensitive | lineage1.1.2 | None | SRR22424835 | HR-TB | lineage1.1.2 | None | SRR16058486 | Sensitive | lineage1.1.2 | None | SRR22424834 | HR-TB | lineage1.1.2 | None | SRR22424880 | HR-TB | lineage1.1.2 | None | SRR1175061 | Sensitive | lineage1.1.2 | None | SRR1180206 | Sensitive | lineage1.1.2 | None | SRR8380886 | Sensitive | lineage1.1.2 | in | SRR29772516 | Sensitive | lineage1.1.2 | None | SRR25827675 | Sensitive | lineage1.1.2 | None | SRR29096411 | Sensitive | lineage1.1.2 | None | SRR22249414 | Sensitive | lineage1.1.2 | None | SRR19428616 | Sensitive | lineage1.1.2;lineage3.1.1 | None | SRR1180285 | Sensitive | lineage1.1.2 | None | ERR13262102 | Sensitive | lineage1.1.2 | None | SRR28044835 | Sensitive | lineage1.1.2 | None | SRR28045627 | Other | lineage1.1.2 | None | SRR21733217 | Sensitive | lineage1.1.2 | None | ERR4819610 | Sensitive | lineage1.1.2 | None | SRR29440742 | MDR-TB | lineage1.1.2 | None | SRR29772638 | MDR-TB | lineage1.1.2 | None | SRR1169531 | Sensitive | lineage1.1.2 | None | SRR7069520 | Sensitive | lineage1.1.2 | None | SRR21733204 | Sensitive | lineage1.1.2 | None | SRR21732188 | Sensitive | lineage1.1.2 | None | SRR29772823 | MDR-TB | lineage1.1.2 | None | SRR1180335 | HR-TB | lineage1.1.2 | None | ERR2514929 | HR-TB | lineage1.1.2 | None | SRR1180266 | MDR-TB | lineage1.1.2 | None | SRR1169496 | HR-TB | lineage1.1.2 | None | SRR25340838 | Other | lineage1.1.2 | None | SRR29231513 | Sensitive | lineage1.1.2 | None | SRR29772794 | RR-TB | lineage1.1.2 | None | ERR13262176 | Sensitive | lineage1.1.2 | None | SAMN02599018 | Sensitive | lineage1.1.2 | None | SRR22251733 | Sensitive | lineage1.1.2 | None | SRR1172227 | Sensitive | lineage1.1.2 | None | SRR19428619 | Sensitive | lineage1.1.2;lineage3.1.1 | None | SRR28868727 | Sensitive | lineage1.1.2 | None | SRR29231449 | Sensitive | lineage1.1.2 | None | SRR12882729 | Sensitive | lineage1.1.2 | None | SRR8375622 | MDR-TB | lineage1.1.2 | None | SRR22424801 | HR-TB | lineage1.1.2 | None | SRR12882157 | Sensitive | lineage1.1.2 | None | ERR4796386 | Sensitive | lineage1.1.2 | in | ERR4796501 | Sensitive | lineage1.1.2 | in | ERR4798711 | Sensitive | lineage1.1.2 | in | ERR4797294 | Sensitive | lineage1.1.2 | in | SRR21732922 | Sensitive | lineage1.1.2 | None | ERR4799596 | HR-TB | lineage1.1.2 | in | SRR12882290 | Sensitive | lineage1.1.2 | None | ERR4797599 | Sensitive | lineage1.1.2 | in | ERR4818117 | Sensitive | lineage1.1.2 | gb | ERR4798245 | Sensitive | lineage1.1.2 | in | SRR7070257 | Sensitive | lineage1.1.2 | None | ERR4798846 | Sensitive | lineage1.1.2 | in | SAMN02598982 | Sensitive | lineage1.1.2 | in | SRR21732994 | Sensitive | lineage1.1.2 | None | SRR28044770 | Sensitive | lineage1.1.2 | None | SRR28044363 | Other | lineage1.1.2 | None | SRR1180470 | HR-TB | lineage1.1.2 | None | SRR1183140 | Sensitive | lineage1.1.2 | None | ERR550621 | Sensitive | lineage1.1.2 | de | ERR400448 | Other | lineage1.1.2 | gb | SRR2100735 | Sensitive | lineage1.1.2 | None | ERR4816713 | Sensitive | lineage1.1.2 | gb | ERR2512407 | Sensitive | lineage1.1.2 | gb | ERR2512415 | Sensitive | lineage1.1.2 | gb | ERR2512478 | Sensitive | lineage1.1.2 | gb | SRR6045574 | Sensitive | lineage1.1.2 | gb | SRR6046329 | Sensitive | lineage1.1.2 | gb | SRR22249528 | Sensitive | lineage1.1.2 | None | SRR22251059 | Sensitive | lineage1.1.2 | None | SRR28044377 | Sensitive | lineage1.1.2 | None | SRR28044828 | RR-TB | lineage1.1.2 | None | ERR11050716 | Sensitive | lineage1.1.2 | None | SRR16058188 | Other | lineage1.1.2 | None | SRR8380943 | MDR-TB | lineage1.1.2 | in | SRR1183143 | Sensitive | lineage1.1.2 | None | ERR7902768 | Sensitive | lineage1.1.2 | None | SRR8380941 | Sensitive | lineage1.1.2 | in | ERR4798262 | Sensitive | lineage1.1.2 | None | ERR13261059 | Sensitive | lineage1.1.2 | None | SRR16058247 | Sensitive | lineage1.1.2 | None | SRR1169576 | Sensitive | lineage1.1.2 | None | SRR1172228 | Sensitive | lineage1.1.2 | None | SRR21662803 | Sensitive | lineage1.1.2 | None | SRR1180223 | Sensitive | lineage1.1.2 | None | ERR386843 | Sensitive | lineage1.1.2 | None | SRR30182339 | Other | lineage1.1.2 | None | SRR1180332 | Sensitive | lineage1.1.2 | None | ERR13262041 | Other | lineage1.1.2 | None | ERR11049959 | Sensitive | lineage1.1.2 | None | ERR11050950 | Sensitive | lineage1.1.2 | None | ERR9657200 | Sensitive | lineage1.1.2 | None | SRR29772583 | MDR-TB | lineage1.1.2 | None | SRR29772774 | MDR-TB | lineage1.1.2 | None | ERR9125701 | Other | lineage1.1.2 | None | SRR11342378 | HR-TB | lineage1.1.2 | None | SRR1169575 | Sensitive | lineage1.1.2 | None | ERR4821021 | Sensitive | lineage1.1.2 | None | SRR11348164 | Sensitive | lineage1.1.2 | None | SRR1180248 | HR-TB | lineage1.1.2 | None | SRR29772757 | MDR-TB | lineage1.1.2 | None | SRR24061594 | HR-TB | lineage1.1.2 | None | SRR30182512 | Sensitive | lineage1.1.2 | None | SRR19428620 | Sensitive | lineage1.1.2;lineage3.1.1 | None | SRR18213917 | Sensitive | lineage1.1.2 | None | SRR29231182 | Sensitive | lineage1.1.2 | None | SRR1174841 | HR-TB | lineage1.1.2 | None | SRR19428529 | MDR-TB | lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | None | SRR1169565 | HR-TB | lineage1.1.2 | None | ERR387035 | Sensitive | lineage1.1.2 | None | ERR11068141 | Sensitive | lineage1.1.2 | None | SRR15014635 | MDR-TB | lineage1.1.2 | None | SRR25340949 | Pre-XDR-TB | lineage1.1.2;lineage3.1.2 | None | SRR3103071 | Pre-XDR-TB | lineage1.1.2;lineage3 | None | ERR4831498 | MDR-TB | lineage1.1.2 | None | SRR10500305 | MDR-TB | lineage1.1.2 | None | SRR6964496 | Sensitive | lineage1.1.2 | None | SRR10500306 | MDR-TB | lineage1.1.2 | None | SRR1169574 | Sensitive | lineage1.1.2 | None | SRR29289141 | MDR-TB | lineage1.1.2 | None | SRR21732370 | Sensitive | lineage1.1.2 | None | SRR1172304 | Sensitive | lineage1.1.2 | None | SRR27450401 | Sensitive | lineage1.1.2 | None | ERR4798382 | Sensitive | lineage1.1.2 | in | SRR1172860 | Sensitive | lineage1.1.2 | None | ERR4799972 | Sensitive | lineage1.1.2 | in | SRR1169490 | HR-TB | lineage1.1.2 | None | SRR30182866 | Sensitive | lineage1.1.2 | None | ERR4797970 | Sensitive | lineage1.1.2 | in | SRR30182547 | Other | lineage1.1.2 | None | SRR8380899 | Sensitive | lineage1.1.2 | in | ERR351911 | Sensitive | lineage1.1.2 | None | SRR30182416 | Sensitive | lineage1.1.2 | None | SRR1169542 | Sensitive | lineage1.1.2 | None | SAMN02599086 | Sensitive | lineage1.1.2 | in | SAMN02598998 | Sensitive | lineage1.1.2 | in | SRR28044490 | Sensitive | lineage1.1.2 | None | SRR6044769 | Sensitive | lineage1.1.2 | None | SRR28044926 | Sensitive | lineage1.1.2 | None | SRR28044501 | Sensitive | lineage1.1.2 | None | SRR28045415 | Sensitive | lineage1.1.2 | None | SRR25340749 | Sensitive | lineage1.1.2 | None | SRR28409344 | Sensitive | lineage1.1.2 | None | ERR400399 | HR-TB | lineage1.1.2 | gb | SRR2099955 | Sensitive | lineage1.1.2 | None | SRR2100037 | Sensitive | lineage1.1.2 | None | SRR2100872 | HR-TB | lineage1.1.2 | None | SRR2100900 | HR-TB | lineage1.1.2 | None | SRR2101203 | Sensitive | lineage1.1.2 | None | SRR2101248 | Sensitive | lineage1.1.2 | None | SRR2101292 | Sensitive | lineage1.1.2 | None | ERR4817834 | Sensitive | lineage1.1.2 | gb | ERR4819136 | Sensitive | lineage1.1.2 | gb | ERR4821285 | Sensitive | lineage1.1.2 | gb | ERR2513070 | Sensitive | lineage1.1.2 | gb | ERR2512509 | Sensitive | lineage1.1.2;lineage4.8 | gb | ERR2513820 | Sensitive | lineage1.1.2 | gb | SRR29231405 | Sensitive | lineage1.1.2 | None | SRR17658568 | Sensitive | lineage1.1.2 | None | ERR13289668 | Sensitive | lineage1.1.2 | None | ERR230111 | Sensitive | lineage1.1.2 | None | ERR270772 | HR-TB | lineage1.1.2 | None | SRR5818677 | Sensitive | lineage1.1.2 | dj | ERR13261291 | Sensitive | lineage1.1.2 | None | SRR5818693 | Sensitive | lineage1.1.2 | dj | SRR5818650 | Sensitive | lineage1.1.2 | dj | SRR1174830 | Sensitive | lineage1.1.2 | None | SRR1180340 | Sensitive | lineage1.1.2 | None | SRR28045425 | Sensitive | lineage1.1.2 | None | SRR29231295 | Sensitive | lineage1.1.2 | None | SRR19428523 | HR-TB | lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | None | ERR4796671 | Sensitive | lineage1.1.2 | in | SRR28045436 | Sensitive | lineage1.1.2 | None | SRR15014653 | MDR-TB | lineage1.1.2 | None | SRR1172737 | Sensitive | lineage1.1.2 | None | ERR4797316 | Other | lineage1.1.2 | in | SRR1180461 | Sensitive | lineage1.1.2 | None | SRR28045612 | Sensitive | lineage1.1.2 | None | SRR28045649 | Sensitive | lineage1.1.2 | None | ERR9125849 | Sensitive | lineage1.1.2 | None | ERR11050938 | Sensitive | lineage1.1.2 | None | SRR1172329 | HR-TB | lineage1.1.2 | None | SRR1180135 | HR-TB | lineage1.1.2 | None | SRR1183011 | HR-TB | lineage1.1.2 | None | SRR22424914 | Sensitive | lineage1.1.2 | None | SRR22424919 | MDR-TB | lineage1.1.2 | None | SRR1169491 | MDR-TB | lineage1.1.2 | None | SRR28409444 | HR-TB | lineage1.1.2 | None | SRR29055751 | Sensitive | lineage1.1.2 | None | SRR1172872 | Sensitive | lineage1.1.2 | None | SRR28045079 | Sensitive | lineage1.1.2 | None | SRR1172157 | MDR-TB | lineage1.1.2 | None | SRR11348161 | Sensitive | lineage1.1.2 | None | ERR270660 | Sensitive | lineage1.1.2 | None | ERR11050888 | Sensitive | lineage1.1.2 | None | ERR13289574 | Sensitive | lineage1.1.2 | None | SRR18149476 | Sensitive | lineage1.1.2 | None | SRR22250060 | Sensitive | lineage1.1.2 | None | SRR11348165 | Sensitive | lineage1.1.2 | None | SRR29772822 | HR-TB | lineage1.1.2 | None | SRR29231406 | HR-TB | lineage1.1.2 | None | SRR1172316 | HR-TB | lineage1.1.2 | None | ERR13266954 | HR-TB | lineage1.1.2 | None | SRR21690132 | Sensitive | lineage1.1.2 | None | SRR28044497 | Sensitive | lineage1.1.2 | None | SRR29126312 | HR-TB | lineage1.1.2 | None | ERR386797 | Sensitive | lineage1.1.2 | None | ERR13266961 | Sensitive | lineage1.1.2 | None | ERR351865 | Sensitive | lineage1.1.2 | None | SRR19392724 | MDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | None | SRR8380878 | Sensitive | lineage1.1.2 | in |
|---|
