Rv3862c - c.9C>T
Drug resistance types
88 Sensitive
1 RR-TB
15 HR-TB
37 MDR-TB
30 Pre-XDR-TB
1 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 142 |
| lineage4.1.2.1;lineage2.2.1 | 7 |
| lineage4.4.1.1 | 1 |
| lineage4.2.1;lineage4.1.2.1 | 2 |
| lineage4.2.2.2 | 18 |
| lineage4.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.8;lineage4.1.2.1 | 1 |
| lineage4.8 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.2.2.2;lineage1.1.2 | 1 |
| lineage2.2.1 | 1 |
| lineage4.2.2.2;lineage2.2.1 | 1 |
| lineage4.3.4.1;lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 180 |
Geographic prevalence
Country level data for this variant is available for 50 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4827444 | MDR-TB | lineage4.1.2.1 | None | ERR4822520 | HR-TB | lineage4.1.2.1 | None | ERR3276053 | Sensitive | lineage4.1.2.1 | nl | ERR4827564 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR4830040 | Sensitive | lineage4.1.2.1 | tj | SRR6256999 | MDR-TB | lineage4.1.2.1 | None | ERR4828903 | Sensitive | lineage4.4.1.1 | None | SAMN02419594 | HR-TB | lineage4.1.2.1 | by | SRR6485154 | Sensitive | lineage4.1.2.1 | None | SRR6484855 | MDR-TB | lineage4.1.2.1 | None | SRR6356970 | Pre-XDR-TB | lineage4.2.1;lineage4.1.2.1 | None | SRR6356993 | Pre-XDR-TB | lineage4.2.1;lineage4.1.2.1 | None | SRR6485053 | Sensitive | lineage4.1.2.1 | None | SRR6485080 | HR-TB | lineage4.1.2.1 | None | SRR6484846 | Sensitive | lineage4.1.2.1 | None | SRR6484943 | HR-TB | lineage4.1.2.1 | None | SRR6484935 | Sensitive | lineage4.1.2.1 | None | ERR4831006 | Pre-XDR-TB | lineage4.2.2.2 | np | SRR6832074 | Sensitive | lineage4.1.2.1 | None | ERR4831158 | Other | lineage4.1.2.1 | de | SRR6831859 | Sensitive | lineage4.1.2.1 | None | SRR6831992 | Sensitive | lineage4.1.2.1 | None | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | SRR6785421 | HR-TB | lineage4.1.2.1 | None | SRR6832226 | Sensitive | lineage4.1.2.1 | None | SRR6785332 | Sensitive | lineage4.1.2.1 | None | SRR6785425 | Sensitive | lineage4.1.2.1 | None | SRR6832255 | Sensitive | lineage4.1.2.1 | None | SRR6785428 | Sensitive | lineage4.1 | None | SRR6832559 | Sensitive | lineage4.1.2.1 | None | SRR6832274 | HR-TB | lineage4.1.2.1 | None | SRR6832361 | Other | lineage4.1.2.1 | None | SRR6832397 | Sensitive | lineage4.1.2.1 | None | SRR6832545 | MDR-TB | lineage4.1.2.1 | None | SRR6832727 | Sensitive | lineage4.1.2.1 | None | SAMN02419637 | Pre-XDR-TB | lineage4.1.2.1 | by | SRR6831783 | Sensitive | lineage4.1.2.1 | None | ERR11049078 | Other | lineage4.1.2.1 | None | ERR11044636 | Sensitive | lineage4.1.2.1 | None | ERR108449 | Sensitive | lineage4.1.2.1 | ru | ERR10465857 | Sensitive | lineage4.1.2.1 | None | ERR11043533 | Sensitive | lineage4.1.2.1 | None | ERR11043820 | Sensitive | lineage4.1.2.1 | None | ERR3639742 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11049022 | Other | lineage4.1.2.1 | None | ERR133818 | Sensitive | lineage4.1.2.1 | ru | ERR4796768 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4796814 | Sensitive | lineage3.1.2.1 | in | ERR4796548 | MDR-TB | lineage4.2.2.2 | in | ERR4796822 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797441 | MDR-TB | lineage4.2.2.2 | in | ERR4799163 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4798135 | XDR-TB | lineage4.2.2.2 | in | ERR4797491 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4799336 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR5865473 | MDR-TB | lineage4.1.2.1 | None | ERR4799476 | HR-TB | lineage4.2.2.2 | in | ERR4800015 | HR-TB | lineage4.2.2.2 | in | ERR5865472 | MDR-TB | lineage4.1.2.1 | None | ERR4800217 | MDR-TB | lineage4.2.2.2 | in | ERR11049583 | HR-TB | lineage4.1.2.1 | None | ERR5917732 | MDR-TB | lineage4.1.2.1 | by | ERR5866491 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5866492 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5917680 | Sensitive | lineage4.1.2.1 | by | ERR11049893 | Sensitive | lineage4.1.2.1 | None | ERR11049932 | Sensitive | lineage4.1.2.1 | None | ERR8665924 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR8665898 | MDR-TB | lineage4.1.2.1 | None | ERR8773978 | HR-TB | lineage4.1.2.1 | None | ERR8773553 | MDR-TB | lineage4.2.2.2 | None | ERR8665948 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR8773555 | MDR-TB | lineage4.2.2.2 | None | SRR1159245 | HR-TB | lineage4.1.2.1 | None | SRR10379888 | Sensitive | lineage4.1.2.1 | None | SRR11033733 | Sensitive | lineage4.1.2.1 | None | SRR11033770 | Sensitive | lineage4.1.2.1 | None | SRR10525351 | MDR-TB | lineage4.1.2.1 | None | SRR1163173 | MDR-TB | lineage4.1.2.1 | None | SRR1163073 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1162494 | HR-TB | lineage4.1.2.1 | None | SRR1162997 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1163036 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR1163416 | MDR-TB | lineage4.1.2.1 | None | SRR1163309 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1163446 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR1168963 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1163447 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1172239 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1169091 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR1168976 | MDR-TB | lineage4.1.2.1 | None | SRR1169102 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1172093 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR1181081 | HR-TB | lineage4.1.2.1 | None | SRR1172313 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1172440 | MDR-TB | lineage4.1.2.1 | None | SRR13232767 | MDR-TB | lineage4.1.2.1 | None | SRR13232753 | MDR-TB | lineage4.1.2.1 | None | SRR1181119 | HR-TB | lineage4.1.2.1 | None | SRR15014766 | MDR-TB | lineage4.1.2.1 | None | SRR14782067 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR14782580 | Sensitive | lineage4.1.2.1 | None | SRR14782698 | Sensitive | lineage4.1.2.1 | None | SRR14782757 | Sensitive | lineage4.1.2.1 | None | SRR14801825 | Sensitive | lineage4.1.2.1 | None | SRR14807480 | Sensitive | lineage4.1.2.1 | None | SRR14782208 | Sensitive | lineage4.1.2.1 | None | SRR14782414 | Sensitive | lineage4.1.2.1 | None | SRR14782500 | Sensitive | lineage4.8;lineage4.1.2.1 | None | SRR14782560 | Sensitive | lineage4.1.2.1 | None | SRR14782752 | Sensitive | lineage4.1.2.1 | None | SRR14801287 | Sensitive | lineage4.1.2.1 | None | SRR14801339 | Sensitive | lineage4.1.2.1 | None | SRR14801923 | Sensitive | lineage4.1.2.1 | None | SRR18714940 | Sensitive | lineage4.1.2.1 | None | SRR16088453 | Sensitive | lineage4.1.2.1 | None | SRR18714819 | Sensitive | lineage4.1.2.1 | None | SRR18714865 | Sensitive | lineage4.1.2.1 | None | SRR19303835 | Sensitive | lineage4.1.2.1 | None | SRR18715065 | MDR-TB | lineage4.1.2.1 | None | SRR18715348 | Sensitive | lineage4.1.2.1 | None | SRR19276621 | Pre-XDR-TB | lineage4.8 | None | ERR11050895 | Sensitive | lineage4.1.2.1 | None | SRR22175173 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR11050946 | MDR-TB | lineage4.1.2.1 | None | ERR11068287 | Sensitive | lineage4.1.2.1 | None | SRR22424814 | Sensitive | lineage3.1.2.1 | None | ERR11069001 | Sensitive | lineage4.1.2.1 | None | ERR11082391 | MDR-TB | lineage4.1.2.1 | None | ERR11081516 | MDR-TB | lineage4.1.2.1 | None | ERR11082818 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR23861893 | RR-TB | lineage4.1.2.1 | None | SRR3675497 | Other | lineage4.1.2.1 | None | SRR23861876 | Sensitive | lineage4.1.2.1 | None | SRR23938592 | MDR-TB | lineage4.1.2.1 | None | ERR11243588 | Sensitive | lineage4.1.2.1 | None | SRR23862124 | Sensitive | lineage4.1.2.1 | None | SRR23862164 | Sensitive | lineage4.1.2.1 | None | SRR23862170 | Sensitive | lineage4.1.2.1 | None | SRR23862169 | Sensitive | lineage4.1.2.1 | None | ERR11243510 | Sensitive | lineage4.1.2.1 | None | ERR11243512 | Sensitive | lineage4.1.2.1 | None | SRR3544738 | Sensitive | lineage4.1.2.1 | None | ERR229930 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR8380892 | MDR-TB | lineage4.2.2.2 | in | ERR2199888 | Sensitive | lineage4.1.2.1 | de | SAMN02419677 | MDR-TB | lineage4.1.2.1 | by | ERR2512578 | Sensitive | lineage4.1.2.1 | gb | ERR229938 | Other | lineage4.1.2.1 | ru | ERR229941 | Sensitive | lineage4.1.2.1 | ru | ERR2503544 | Sensitive | lineage4.1.2.1 | None | ERR2503404 | Sensitive | lineage4.1.2.1 | None | ERR2503418 | Sensitive | lineage4.1.2.1 | fi | ERR2503458 | Sensitive | lineage4.1.2.1 | fi | ERR2503368 | Sensitive | lineage4.1.2.1 | None | ERR2503437 | Sensitive | lineage4.1.2.1 | fi | ERR2503501 | Sensitive | lineage4.1.2.1 | fi | ERR2503546 | Sensitive | lineage4.1.2.1 | fi | SAMN02419607 | Pre-XDR-TB | lineage4.1.2.1 | by | ERR2503548 | Sensitive | lineage4.1.2.1 | fi | ERR2503564 | Sensitive | lineage4.1.2.1 | fi | ERR3275397 | Sensitive | lineage4.1.2.1 | nl | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR552460 | Sensitive | lineage4.1.2.1 | de | ERR551774 | Sensitive | lineage4.1.2.1 | de | SRR5153132 | Sensitive | lineage4.1.2.1 | None | ERR2516403 | MDR-TB | lineage4.1.2.1 | nl | ERR2514673 | Other | lineage4.1.2.1 | gb | SRR5341223 | Pre-XDR-TB | lineage4.2.2.2;lineage1.1.2 | in | SRR5341246 | Other | lineage2.2.1 | None | SRR5341261 | MDR-TB | lineage4.2.2.2;lineage2.2.1 | in | SRR5341233 | MDR-TB | lineage4.2.2.2 | in | ERR2516700 | MDR-TB | lineage4.1.2.1 | nl | ERR2514852 | Sensitive | lineage4.1.2.1 | gb | ERR2446589 | Sensitive | lineage4.1.2.1 | nl | SRR23340113 | Sensitive | lineage4.1.2.1 | None | ERR2517494 | Sensitive | lineage4.1.2.1 | nl | SRR23310991 | Sensitive | lineage4.3.4.1;lineage4.1.2.1 | None | SRR23340048 | Sensitive | lineage4.1.2.1 | None | SRR23340045 | Sensitive | lineage4.1.2.1 | None |
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