Rv3862c - c.9C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
121 Sensitive
0 RR-TB
21 HR-TB
53 MDR-TB
36 Pre-XDR-TB
2 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 195 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage4.2.2.2 | 26 |
| lineage2.2.1;lineage4.1.2.1 | 10 |
| lineage4.1.2.1;lineage4.8 | 3 |
| lineage4.1.2.1;lineage4.2.1 | 2 |
| lineage4.1.2.1;lineage4.3.4.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2;lineage4.2.2.2 | 1 |
| lineage4.8 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 245 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2512578 | Sensitive | lineage4.1.2.1 | gb | ERR2514852 | Sensitive | lineage4.1.2.1 | gb | ERR2514673 | Sensitive | lineage4.1.2.1 | gb | SRR14782698 | Sensitive | lineage4.1.2.1 | None | SRR29273956 | MDR-TB | lineage4.1.2.1 | None | ERR5865473 | MDR-TB | lineage4.1.2.1 | None | SRR5341261 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | in | SRR29231535 | HR-TB | lineage4.2.2.2 | None | SRR24673544 | Sensitive | lineage4.1.2.1 | None | ERR11044636 | Sensitive | lineage4.1.2.1 | None | ERR10465857 | Sensitive | lineage4.1.2.1 | None | SRR1172440 | MDR-TB | lineage4.1.2.1 | None | SRR25340787 | MDR-TB | lineage4.2.2.2 | None | SRR21689659 | HR-TB | lineage4.1.2.1 | None | SRR14782414 | Sensitive | lineage4.1.2.1 | None | SRR14782580 | Sensitive | lineage4.1.2.1 | None | ERR2600611 | Other | lineage4.1.2.1 | None | ERR5917732 | MDR-TB | lineage4.1.2.1 | by | SRR6832074 | Sensitive | lineage4.1.2.1 | None | SRR7069045 | Sensitive | lineage4.1.2.1 | None | SRR14782067 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR2600526 | HR-TB | lineage4.1.2.1;lineage4.8 | None | ERR11082391 | MDR-TB | lineage4.1.2.1 | None | SRR6831992 | Sensitive | lineage4.1.2.1 | None | ERR3639742 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2791555 | Sensitive | lineage4.1.2.1 | None | SRR28240103 | Sensitive | lineage4.1.2.1 | None | SRR1163309 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3276053 | Sensitive | lineage4.1.2.1 | nl | ERR2446589 | Sensitive | lineage4.1.2.1 | nl | SRR28044944 | XDR-TB | lineage4.2.2.2 | None | ERR11049893 | Sensitive | lineage4.1.2.1 | None | ERR2503501 | Sensitive | lineage4.1.2.1 | fi | SRR6485154 | Sensitive | lineage4.1.2.1 | None | SRR1163036 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR229930 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR11033733 | Sensitive | lineage4.1.2.1 | None | SRR13232767 | MDR-TB | lineage4.1.2.1 | None | SRR1169091 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR2503404 | Sensitive | lineage4.1.2.1 | None | ERR5865472 | MDR-TB | lineage4.1.2.1 | None | SRR16088453 | Sensitive | lineage4.1.2.1 | None | ERR13266123 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR13276305 | MDR-TB | lineage4.1.2.1 | None | SRR7069957 | Sensitive | lineage4.1.2.1 | None | SRR22175173 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29273635 | MDR-TB | lineage4.1.2.1 | None | ERR4827444 | MDR-TB | lineage4.1.2.1 | None | SRR6356993 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR14801339 | Sensitive | lineage4.1.2.1 | None | ERR11049022 | Other | lineage4.1.2.1 | None | SRR18714819 | Sensitive | lineage4.1.2.1 | None | SRR18714940 | Sensitive | lineage4.1.2.1 | None | SRR23310991 | Sensitive | lineage4.1.2.1;lineage4.3.4.1 | None | SRR24673560 | Sensitive | lineage4.1.2.1 | None | SRR21690593 | Sensitive | lineage4.1.2.1 | None | ERR11049078 | Other | lineage4.1.2.1 | None | SRR14782752 | Sensitive | lineage4.1.2.1 | None | SRR14782757 | Sensitive | lineage4.1.2.1 | None | SRR1169102 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4799476 | HR-TB | lineage4.2.2.2 | in | ERR4800015 | HR-TB | lineage4.2.2.2 | in | ERR4797491 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR6484943 | HR-TB | lineage4.1.2.1 | None | ERR5866491 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11243512 | Sensitive | lineage4.1.2.1 | None | SRR7069816 | Sensitive | lineage4.1.2.1 | None | SRR16088108 | Sensitive | lineage4.1.2.1;lineage4.8 | None | ERR4796822 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR2503544 | Sensitive | lineage4.1.2.1 | None | SRR23862170 | Sensitive | lineage4.1.2.1 | None | SRR28351225 | Sensitive | lineage4.1.2.1 | None | SRR6832255 | Sensitive | lineage4.1.2.1 | None | SRR6832274 | HR-TB | lineage4.1.2.1 | None | ERR4831006 | Pre-XDR-TB | lineage4.2.2.2 | np | SRR1163073 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR24256096 | Sensitive | lineage4.1.2.1 | None | ERR4828903 | Sensitive | lineage4.4.1.1 | None | ERR11773836 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR3142011 | Sensitive | lineage4.1.2.1 | None | SRR28239826 | Sensitive | lineage4.1.2.1 | None | SRR23340113 | Sensitive | lineage4.1.2.1 | None | SRR14801923 | Sensitive | lineage4.1.2.1 | None | ERR2517494 | Sensitive | lineage4.1.2.1 | nl | ERR2199888 | Sensitive | lineage4.1.2.1 | de | ERR13262012 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR5341233 | MDR-TB | lineage4.2.2.2 | in | SRR5341223 | Pre-XDR-TB | lineage1.1.2;lineage4.2.2.2 | in | SAMN02419594 | HR-TB | lineage4.1.2.1 | by | SAMN02419607 | Pre-XDR-TB | lineage4.1.2.1 | by | SAMN02419637 | Pre-XDR-TB | lineage4.1.2.1 | by | SAMN02419677 | MDR-TB | lineage4.1.2.1 | by | SRR6485080 | HR-TB | lineage4.1.2.1 | None | SRR19276621 | Pre-XDR-TB | lineage4.8 | None | SRR25395638 | Sensitive | lineage4.1.2.1 | None | ERR11081516 | MDR-TB | lineage4.1.2.1 | None | SRR22249948 | Sensitive | lineage4.1.2.1 | None | SRR1162997 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR14782500 | Sensitive | lineage4.1.2.1;lineage4.8 | None | SRR18715348 | Sensitive | lineage4.1.2.1 | None | SRR6832727 | Sensitive | lineage4.1.2.1 | None | ERR11050946 | MDR-TB | lineage4.1.2.1 | None | ERR13273267 | HR-TB | lineage4.1.2.1 | None | ERR3275397 | Sensitive | lineage4.1.2.1 | nl | SRR29772719 | MDR-TB | lineage4.1.2.1 | None | SRR6356970 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR13273324 | Sensitive | lineage4.1.2.1 | None | SRR28239770 | HR-TB | lineage4.1.2.1 | None | ERR2503548 | Sensitive | lineage4.1.2.1 | fi | ERR2503418 | Sensitive | lineage4.1.2.1 | fi | SRR3544738 | Sensitive | lineage4.1.2.1 | None | SRR1181119 | HR-TB | lineage4.1.2.1 | None | SRR29274130 | MDR-TB | lineage4.1.2.1 | None | SRR15014766 | MDR-TB | lineage4.1.2.1 | None | SRR13232753 | MDR-TB | lineage4.1.2.1 | None | SRR6785332 | Sensitive | lineage4.1.2.1 | None | ERR8773553 | MDR-TB | lineage4.2.2.2 | None | ERR13266796 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR28240182 | Sensitive | lineage4.1.2.1 | None | SRR3675497 | Other | lineage4.1.2.1 | None | SRR24709956 | MDR-TB | lineage4.1.2.1 | None | SRR14801825 | Sensitive | lineage4.1.2.1 | None | SRR14807480 | Sensitive | lineage4.1.2.1 | None | ERR2791542 | Sensitive | lineage4.1.2.1 | None | SRR6831783 | Sensitive | lineage4.1.2.1 | None | SRR6831859 | Sensitive | lineage4.1.2.1 | None | SRR6256999 | MDR-TB | lineage4.1.2.1 | None | ERR4830040 | Sensitive | lineage4.1.2.1 | tj | ERR11243510 | Sensitive | lineage4.1.2.1 | None | SRR23861876 | Sensitive | lineage4.1.2.1 | None | SRR28240212 | Sensitive | lineage4.1.2.1 | None | ERR2791535 | Sensitive | lineage4.1.2.1 | None | SRR19303835 | Sensitive | lineage4.1.2.1 | None | ERR11775701 | Sensitive | lineage4.1.2.1 | None | ERR5917680 | Sensitive | lineage4.1.2.1 | by | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR8665924 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR8665948 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4831158 | Other | lineage4.1.2.1 | de | ERR552460 | Sensitive | lineage4.1.2.1 | de | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | SRR5153132 | Sensitive | lineage4.1.2.1 | None | ERR11243588 | Sensitive | lineage4.1.2.1 | None | SRR28240174 | HR-TB | lineage4.1.2.1 | None | ERR2600454 | Sensitive | lineage4.1.2.1 | None | ERR552725 | Other | lineage4.1.2.1 | None | SRR3142010 | Other | lineage4.1.2.1 | None | SRR6484855 | MDR-TB | lineage4.1.2.1 | None | SRR6485053 | Sensitive | lineage4.1.2.1 | None | SRR23340048 | Sensitive | lineage4.1.2.1 | None | SRR6832361 | Other | lineage4.1.2.1 | None | ERR11049583 | HR-TB | lineage4.1.2.1 | None | SRR1163173 | MDR-TB | lineage4.1.2.1 | None | SRR23252659 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2600455 | Sensitive | lineage4.1.2.1 | None | ERR4798135 | XDR-TB | lineage4.2.2.2 | in | SRR23340045 | Sensitive | lineage4.1.2.1 | None | SRR6832559 | Sensitive | lineage4.1.2.1 | None | SRR18714865 | Sensitive | lineage4.1.2.1 | None | ERR11068287 | Sensitive | lineage4.1.2.1 | None | ERR11069001 | Sensitive | lineage4.1.2.1 | None | SRR1172239 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1163446 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR1163447 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6832226 | Sensitive | lineage4.1.2.1 | None | SRR6484935 | Sensitive | lineage4.1.2.1 | None | SRR6832545 | MDR-TB | lineage4.1.2.1 | None | ERR11082818 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1163416 | MDR-TB | lineage4.1.2.1 | None | SRR6832397 | Sensitive | lineage4.1.2.1 | None | ERR11043820 | Sensitive | lineage4.1.2.1 | None | ERR11050895 | Sensitive | lineage4.1.2.1 | None | SRR29538920 | Sensitive | lineage4.1.2.1 | None | SRR22424814 | Other | lineage3.1.2.1 | None | ERR2503546 | Sensitive | lineage4.1.2.1 | fi | ERR2503564 | Sensitive | lineage4.1.2.1 | fi | ERR2503437 | Sensitive | lineage4.1.2.1 | fi | ERR2503458 | Sensitive | lineage4.1.2.1 | fi | SRR10379888 | Sensitive | lineage4.1.2.1 | None | SRR6484846 | Sensitive | lineage4.1.2.1 | None | SRR1172313 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR24673526 | Sensitive | lineage4.1.2.1 | None | SRR24673500 | Sensitive | lineage4.1.2.1 | None | SRR29666887 | Other | lineage4.1.2.1 | None | SRR29681481 | Sensitive | lineage4.1.2.1 | None | SRR28239700 | Sensitive | lineage4.1.2.1 | None | SRR1168976 | MDR-TB | lineage4.1.2.1 | None | ERR552726 | Other | lineage4.1.2.1 | None | ERR11043533 | Sensitive | lineage4.1.2.1 | None | SRR22251196 | Sensitive | lineage1.1.2 | None | SRR1181081 | HR-TB | lineage4.1.2.1 | None | ERR2791543 | Sensitive | lineage4.1.2.1 | None | SRR14782208 | Sensitive | lineage4.1.2.1 | None | SRR28239842 | Sensitive | lineage4.1.2.1 | None | SRR29273973 | MDR-TB | lineage4.1.2.1 | None | SRR1168963 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29538888 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR8380892 | MDR-TB | lineage4.2.2.2 | in | SRR16088584 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13261258 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR11049932 | Sensitive | lineage4.1.2.1 | None | SRR6785428 | Sensitive | lineage4.1.2.1 | None | SRR28706374 | MDR-TB | lineage4.1.2.1 | None | SRR23861893 | Sensitive | lineage4.1.2.1 | None | ERR8773978 | HR-TB | lineage4.1.2.1 | None | SRR16088594 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR5866492 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR8773555 | MDR-TB | lineage4.2.2.2 | None | ERR13289460 | MDR-TB | lineage4.1.2.1 | None | SRR23862164 | Sensitive | lineage4.1.2.1 | None | SRR23862124 | Sensitive | lineage4.1.2.1 | None | ERR13276348 | MDR-TB | lineage4.1.2.1 | None | SRR16088192 | Sensitive | lineage4.1.2.1 | None | ERR4796768 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4796814 | Sensitive | lineage3.1.2.1 | in | ERR13275905 | MDR-TB | lineage4.1.2.1 | None | ERR4797441 | MDR-TB | lineage4.2.2.2 | in | ERR4827564 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR13284165 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR14801287 | Sensitive | lineage4.1.2.1 | None | ERR4799163 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR1162494 | HR-TB | lineage4.1.2.1 | None | SRR6785425 | Sensitive | lineage4.1.2.1 | None | SRR23938592 | MDR-TB | lineage4.1.2.1 | None | ERR4799336 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4796548 | MDR-TB | lineage4.2.2.2 | in | SRR18715065 | MDR-TB | lineage4.1.2.1 | None | ERR4800217 | MDR-TB | lineage4.2.2.2 | in | SRR10525351 | MDR-TB | lineage4.1.2.1 | None | SRR1172093 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR23862169 | Sensitive | lineage4.1.2.1 | None | SRR14782560 | Sensitive | lineage4.1.2.1 | None | SRR1159245 | HR-TB | lineage4.1.2.1 | None | SRR6785421 | HR-TB | lineage4.1.2.1 | None | ERR4822520 | HR-TB | lineage4.1.2.1 | None | ERR8665898 | MDR-TB | lineage4.1.2.1 | None | SRR24673503 | Sensitive | lineage4.1.2.1 | None | SRR11033770 | Sensitive | lineage4.1.2.1 | None | ERR551774 | Sensitive | lineage4.1.2.1 | de | ERR108449 | Sensitive | lineage4.1.2.1 | ru | ERR133818 | Sensitive | lineage4.1.2.1 | ru | ERR229941 | Sensitive | lineage4.1.2.1 | ru | ERR229938 | Other | lineage4.1.2.1 | ru | ERR2516700 | MDR-TB | lineage4.1.2.1 | nl | ERR2516403 | MDR-TB | lineage4.1.2.1 | nl |
|---|
