lineage | Count |
---|---|
lineage1.2.2.2 | 4 |
lineage3 | 69 |
lineage1.1.3.1 | 1 |
lineage4.1 | 1 |
lineage4.7 | 3 |
lineage4.4.2 | 5 |
lineage4.2.2.2 | 41 |
lineage2.2.1 | 4 |
lineage4.9 | 10 |
lineage4.8 | 21 |
lineage4.4.1.1 | 11 |
lineage4.3.3 | 8 |
lineage4.6.4 | 1 |
lineage4.1.1.3 | 8 |
lineage4.5 | 2 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.2.1 | 10 |
lineage6.3.1 | 2 |
lineage4.3.4.2 | 3 |
1 | |
lineage3.1 | 1 |
lineage1.2.1.2.1 | 4 |
lineage4.6.1.2 | 1 |
lineage4.1.1 | 8 |
lineage1.1.2 | 5 |
lineage3.1.2 | 1 |
La2 | 1 |
lineage4.3.2.1 | 2 |
lineage4.6.2.2 | 1 |
lineage3.1.3 | 1 |
lineage1.1.1 | 1 |
lineage1.2.1.2 | 1 |
lineage4.1.1.1 | 1 |
lineage4.1.2 | 1 |
lineage1.1 | 1 |
lineage1.1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 237 |
ID | Drug resistance | Lineage | Country iso2 | SRR6650425 | Sensitive | lineage1.2.2.2 | None | SRR6797539 | HR-TB | lineage3 | None | SRR6797461 | Sensitive | lineage1.1.3.1 | None | SRR6797641 | HR-TB | lineage3 | None | SRR6930934 | Pre-XDR-TB | lineage4.1 | None | SRR7341641 | MDR-TB | lineage4.7 | ro | SRR6964593 | Sensitive | lineage3 | None | SRR6797805 | Sensitive | lineage3 | None | SRR6824634 | MDR-TB | lineage4.4.2 | cn | ERR3132166 | Sensitive | lineage3 | None | SRR6964649 | MDR-TB | lineage3 | None | SRR7517737 | MDR-TB | lineage4.2.2.2 | None | SRR7517721 | MDR-TB | lineage4.2.2.2 | None | DRR130109 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02414971 | MDR-TB | lineage4.2.2.2 | se | SRR7781507 | MDR-TB | lineage4.9 | None | ERR067685 | RR-TB | lineage4.8 | ru | DRR188598 | Sensitive | lineage3 | None | ERR038754 | MDR-TB | lineage4.4.1.1 | ug | ERR072064 | Sensitive | lineage3 | None | ERR072058 | Sensitive | lineage3 | None | ERR1034799 | HR-TB | lineage4.3.3 | pe | ERR072092 | Sensitive | lineage3 | None | ERR072057 | Sensitive | lineage3 | None | ERR11043127 | MDR-TB | lineage4.2.2.2 | None | ERR1035185 | Sensitive | lineage4.8 | pt | ERR1035325 | Pre-XDR-TB | lineage4.6.4 | br | ERR10395962 | Sensitive | lineage4.8 | None | ERR10969102 | Sensitive | lineage4.8 | None | ERR11043730 | MDR-TB | lineage4.2.2.2 | None | ERR11043163 | MDR-TB | lineage4.2.2.2 | None | ERR117622 | Sensitive | lineage3 | None | ERR11044547 | Sensitive | lineage4.1.1.3 | None | ERR11043743 | HR-TB | lineage4.5 | None | ERR117660 | HR-TB | lineage3;lineage2.2.1 | None | ERR117674 | Sensitive | lineage3 | None | ERR117659 | Sensitive | lineage3 | None | ERR117729 | Sensitive | lineage3 | None | ERR3287368 | Sensitive | lineage4.1.2.1 | pe | ERR1213917 | Sensitive | lineage3 | pk | ERR3803787 | Sensitive | lineage6.3.1 | None | ERR3287538 | MDR-TB | lineage4.9 | None | ERR3323721 | MDR-TB | lineage4.2.2.2 | None | ERR351879 | Sensitive | lineage3 | None | ERR351876 | Sensitive | lineage3 | None | ERR3639766 | MDR-TB | lineage4.2.2.2 | None | ERR386811 | Sensitive | lineage3 | None | ERR4553844 | MDR-TB | lineage4.3.4.2 | None | ERR4195294 | Sensitive | lineage4.8 | None | ERR4553669 | MDR-TB | lineage4.3.4.2 | None | ERR4553728 | MDR-TB | lineage4.3.4.2 | None | ERR386808 | Sensitive | lineage3 | None | ERR400451 | Sensitive | lineage3 | gb | ERR4553757 | MDR-TB | None | ERR4799076 | HR-TB | lineage3 | in | ERR4796658 | Sensitive | lineage1.2.2.2 | in | ERR4799065 | Sensitive | lineage3 | in | ERR4811353 | Pre-XDR-TB | lineage4.4.2 | cn | ERR4799795 | Sensitive | lineage3 | in | ERR4799965 | Pre-XDR-TB | lineage3.1 | in | ERR4812647 | Sensitive | lineage4.9 | pe | ERR4812480 | Sensitive | lineage4.1.2.1 | pe | ERR6866790 | Sensitive | lineage4.1.2.1 | None | ERR6866396 | HR-TB | lineage4.9 | None | ERR6866411 | Sensitive | lineage4.1.2.1 | None | ERR6866558 | HR-TB | lineage4.1.2.1 | None | ERR6866652 | Sensitive | lineage4.1.2.1 | None | ERR7737875 | MDR-TB | lineage4.2.2.2 | None | ERR752071 | Sensitive | lineage1.2.1.2.1 | th | ERR7911440 | MDR-TB | lineage4.1.1.3 | za | ERR7910891 | Sensitive | lineage4.8 | pe | ERR8773939 | HR-TB | lineage4.8 | None | ERR9121259 | Sensitive | lineage4.8 | None | ERR8773951 | Sensitive | lineage4.3.3 | None | ERR9286023 | Sensitive | lineage4.6.1.2 | None | ERR9786445 | Sensitive | lineage4.8 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | ERR9787090 | Sensitive | lineage6.3.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1062897 | MDR-TB | lineage4.4.1.1 | None | SRR10808317 | Sensitive | lineage4.3.3 | None | SRR11033633 | Sensitive | lineage4.3.3 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR10808328 | MDR-TB | lineage4.9 | None | SRR1140729 | MDR-TB | lineage4.4.1.1 | None | SRR1162847 | MDR-TB | lineage4.2.2.2 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1162861 | MDR-TB | lineage4.2.2.2 | None | SRR1162852 | MDR-TB | lineage4.2.2.2 | None | SRR1166822 | MDR-TB | lineage4.2.2.2 | None | SRR1162893 | MDR-TB | lineage4.2.2.2 | None | SRR1165431 | MDR-TB | lineage4.2.2.2 | None | SRR1165530 | MDR-TB | lineage4.2.2.2 | None | SRR1165532 | MDR-TB | lineage4.2.2.2 | None | SRR1165590 | MDR-TB | lineage4.2.2.2 | None | SRR1163168 | MDR-TB | lineage4.2.2.2 | None | SRR1163223 | MDR-TB | lineage4.2.2.2 | None | SRR1165450 | MDR-TB | lineage4.2.2.2 | None | SRR1165554 | MDR-TB | lineage4.2.2.2 | None | SRR1165652 | MDR-TB | lineage4.1.1 | None | SRR1165656 | MDR-TB | lineage4.1.1 | None | SRR1167369 | MDR-TB | lineage4.1.1 | None | SRR1167128 | MDR-TB | lineage4.2.2.2 | None | SRR1167340 | MDR-TB | lineage4.1.1 | None | SRR1166933 | MDR-TB | lineage4.2.2.2 | None | SRR1167124 | MDR-TB | lineage4.2.2.2 | None | SRR1169196 | MDR-TB | lineage4.1.1 | None | SRR1169145 | MDR-TB | lineage4.1.1 | None | SRR14519884 | MDR-TB | lineage4.1.2.1 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR11972237 | Sensitive | lineage1.1.2 | None | SRR13180290 | Sensitive | lineage4.8 | None | SRR13591340 | Sensitive | lineage4.8 | None | SRR1172177 | MDR-TB | lineage4.1.1 | None | SRR1172215 | MDR-TB | lineage4.1.1 | None | SRR11972233 | Other | lineage2.2.1 | None | SRR13180212 | MDR-TB | lineage4.2.2.2 | None | SRR13180286 | Sensitive | lineage4.8 | None | SRR13180336 | Sensitive | lineage4.8 | None | SRR15014720 | Pre-XDR-TB | lineage1.1.2 | None | SRR14520147 | HR-TB | lineage4.3.3 | None | SRR16370462 | MDR-TB | lineage4.1.1.3 | None | SRR15723136 | Other | lineage2.2.1 | None | SRR16088294 | MDR-TB | lineage4.1.2.1 | None | SRR16115036 | HR-TB | lineage4.2.2.2 | None | SRR15014756 | MDR-TB | lineage1.1.2 | None | SRR18213659 | Sensitive | lineage3 | None | SRR16370576 | Sensitive | lineage3 | None | SRR16370467 | Sensitive | lineage4.8 | None | SRR18715278 | HR-TB | lineage4.8 | None | SRR18213735 | HR-TB | lineage1.2.1.2.1 | None | SRR18213777 | MDR-TB | lineage4.2.2.2 | None | SRR18213850 | Sensitive | lineage3 | None | SRR18914231 | Sensitive | lineage3 | None | SRR18715438 | Sensitive | lineage4.3.3 | None | SRR18910170 | HR-TB | lineage4.2.2.2 | None | SRR18911003 | Sensitive | lineage3 | None | SRR19317584 | Sensitive | lineage3 | None | SRR19276631 | MDR-TB | lineage4.9 | None | SRR2100112 | Sensitive | lineage3 | None | SRR19325677 | Sensitive | lineage4.3.3 | None | SRR20969933 | MDR-TB | lineage4.1.1.3 | None | SRR2100117 | Sensitive | lineage3 | None | SRR2100192 | Sensitive | lineage3 | None | SRR2100137 | Sensitive | lineage3 | None | SRR21277319 | Other | lineage4.4.2 | None | SRR2100507 | Sensitive | lineage3 | None | SRR2100594 | Sensitive | lineage3 | None | SRR2101214 | Sensitive | lineage3 | None | SRR21277333 | Sensitive | lineage4.4.2 | None | SRR2100237 | Sensitive | lineage3 | None | SRR2100380 | Sensitive | lineage3 | None | SRR2100618 | Sensitive | lineage3 | None | SRR2101217 | Sensitive | lineage3 | None | SRR22424893 | HR-TB | lineage3.1.2 | None | SRR21713550 | HR-TB | lineage4.9 | None | ERR11081535 | MDR-TB | lineage4.2.2.2 | None | ERR11069109 | MDR-TB | lineage4.7 | None | ERR11082397 | MDR-TB | lineage4.1.2.1 | None | ERR11081950 | MDR-TB | lineage4.8 | None | SRR23862083 | Sensitive | lineage4.8 | None | SRR3135068 | Sensitive | La2 | None | ERR9806635 | MDR-TB | lineage4.3.2.1 | None | ERR10610209 | MDR-TB | lineage4.3.2.1 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | ERR1679587 | MDR-TB | lineage4.6.2.2 | ng | ERR4814848 | Sensitive | lineage4.1.2.1 | gb | ERR4815718 | Sensitive | lineage3 | None | ERR552820 | Sensitive | lineage3.1.3 | de | ERR4816168 | MDR-TB | lineage4.2.2.2 | None | ERR11049193 | MDR-TB | lineage4.2.2.2 | None | ERR3275357 | RR-TB | lineage3 | nl | ERR4816130 | Sensitive | lineage3 | gb | ERR2677397 | MDR-TB | lineage4.2.2.2 | de | ERR4816299 | MDR-TB | lineage4.2.2.2 | None | SAMEA2534052 | MDR-TB | lineage4.8 | uz | ERR4816512 | Other | lineage3 | gb | SAMN02414974 | MDR-TB | lineage4.2.2.2 | se | ERR2184309 | MDR-TB | lineage4.9 | pe | ERR2184319 | Sensitive | lineage4.3.3 | None | ERR2510610 | Pre-XDR-TB | lineage4.1.1.3 | pk | ERR2510516 | RR-TB | lineage3 | pk | ERR2510506 | MDR-TB | lineage3 | pk | ERR2510517 | Pre-XDR-TB | lineage3 | pk | ERR228147 | Sensitive | lineage3 | None | ERR2510621 | MDR-TB | lineage3 | pk | ERR228264 | Sensitive | lineage3 | None | ERR228240 | Sensitive | lineage3 | None | ERR229990 | RR-TB | lineage4.8 | ru | ERR4820700 | Sensitive | lineage3 | None | ERR4818910 | MDR-TB | lineage4.2.2.2 | gb | ERR2512762 | Sensitive | lineage3 | gb | ERR2513563 | Sensitive | lineage3 | gb | ERR4818105 | Sensitive | lineage3 | None | ERR2512430 | Sensitive | lineage3 | gb | SRR5067585 | Sensitive | lineage1.1.1 | vn | SRR5153194 | HR-TB | lineage4.8 | None | ERR4820388 | Sensitive | lineage3 | gb | ERR2514158 | Sensitive | lineage3 | gb | SRR5341283 | Pre-XDR-TB | lineage3 | None | ERR2514799 | Sensitive | lineage3 | gb | ERR4819836 | Sensitive | lineage3 | gb | ERR2517066 | MDR-TB | lineage1.2.2.2 | gb | ERR2517605 | RR-TB | lineage3 | nl | ERR2516771 | MDR-TB | lineage1.2.1.2 | gb | ERR2446418 | RR-TB | lineage3 | nl | ERR4820175 | MDR-TB | lineage4.2.2.2 | gb | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | SAMN02414957 | MDR-TB | lineage4.2.2.2 | se | SAMN02403610 | MDR-TB | lineage4.1.1.1 | None | ERR4827971 | MDR-TB | lineage4.7 | None | SRR6045533 | Sensitive | lineage3 | gb | SRR20969999 | MDR-TB | lineage4.1.1.3 | None | ERR270665 | HR-TB | lineage1.2.1.2.1 | None | SRR6045133 | HR-TB | lineage4.5 | gb | ERR4821240 | Sensitive | lineage3 | None | ERR4821728 | Sensitive | lineage1.1.2 | gb | ERR4827580 | HR-TB | lineage4.1.2 | None | SRR5709792 | Pre-XDR-TB | lineage1.1 | th | ERR4822350 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821752 | Sensitive | lineage3 | gb | SRR5709998 | HR-TB | lineage1.1.1.1 | th | ERR4828828 | MDR-TB | lineage4.9 | None | ERR4829385 | MDR-TB | lineage4.2.2.2 | it | ERR4829954 | Pre-XDR-TB | lineage1.1.2 | None | SRR6152697 | Sensitive | lineage1.2.1.2.1 | ca | SAMN02414961 | MDR-TB | lineage4.2.2.2 | se | ERR3148043 | MDR-TB | lineage4.8 | None | SRR6152991 | HR-TB | lineage4.4.2 | ca | SRR6650163 | Sensitive | lineage1.2.2.2 | None | ERR4831485 | Pre-XDR-TB | lineage3 | None | ERR4831484 | Pre-XDR-TB | lineage3 | None | ERR4831325 | MDR-TB | lineage4.2.2.2 | de |
---|