Run ID: ERR036193
Sample name:
Date: 31-03-2023 08:29:00
Number of reads: 5863833
Percentage reads mapped: 99.46
Strain: lineage3.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 | 1.0 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575932 | p.Glu195Asp | missense_variant | 0.24 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.23 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpR5 | 779371 | p.Ala128Pro | missense_variant | 0.3 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.24 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.21 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.22 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.31 |
PPE35 | 2170461 | p.Gly51Glu | missense_variant | 0.98 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.32 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.46 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.16 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.24 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.34 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.19 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.28 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.45 |
fbiA | 3640383 | c.-160_-159insT | upstream_gene_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.26 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.21 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.32 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.17 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.34 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.25 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.18 |
embC | 4241562 | p.Arg567His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.31 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.36 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.23 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.26 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |