Run ID: ERR046814
Sample name:
Date: 31-03-2023 08:52:20
Number of reads: 3762379
Percentage reads mapped: 98.8
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.23 |
ccsA | 620407 | p.Pro173Ala | missense_variant | 0.28 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 761285 | c.1479G>C | synonymous_variant | 0.18 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.33 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764905 | p.Phe512Leu | missense_variant | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406358 | p.Ile328Thr | missense_variant | 0.2 |
Rv1258c | 1407143 | c.198C>T | synonymous_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.16 |
rrs | 1471658 | n.-188T>G | upstream_gene_variant | 0.16 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473511 | n.-147A>C | upstream_gene_variant | 0.25 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102540 | p.Ala168Gly | missense_variant | 0.23 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.21 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154814 | p.Lys433Thr | missense_variant | 1.0 |
katG | 2155271 | p.Ala281Thr | missense_variant | 0.97 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.18 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.35 |
PPE35 | 2170156 | p.Ala153Pro | missense_variant | 0.32 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.47 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064537 | p.Val552Gly | missense_variant | 1.0 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.16 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.41 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.25 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.15 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.24 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.36 |
embC | 4239973 | c.111T>G | synonymous_variant | 0.18 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.22 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.24 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.29 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.18 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.28 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |