TB-Profiler result

Run: ERR10680086
Summary

Run ID: ERR10680086

Sample name:

Date: 31-03-2023 10:36:25

Number of reads: 2754780

Percentage reads mapped: 99.67

Strain: lineage4.8

Drug-resistance: RR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
pncA 2288777 c.451_464delTTGGCCACCAGGGT frameshift_variant 0.21 pyrazinamide
pncA 2288988 p.Leu85Pro missense_variant 0.12 pyrazinamide
pncA 2289252 c.-11A>C upstream_gene_variant 0.15 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154398 p.Thr572Pro missense_variant 1.0
katG 2154637 p.Ala492Gly missense_variant 1.0
PPE35 2168149 p.Pro822Ser missense_variant 0.99
PPE35 2170065 p.Ala183Gly missense_variant 0.24
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2288835 p.Asp136Ala missense_variant 0.1
ahpC 2726121 c.-72C>T upstream_gene_variant 0.99
fbiD 3339734 p.Ala206Gly missense_variant 0.79
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
rpoA 3878613 c.-106A>C upstream_gene_variant 0.38
rpoA 3878641 c.-134C>G upstream_gene_variant 0.32
clpC1 4039729 p.Asp326Asn missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.33
embB 4248023 p.Glu504Gln missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0