ERR5866347
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829955
|
MDR-TB
|
lineage3
|
pk
|
SRR24709904
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3014612
|
MDR-TB
|
lineage4.1.2.1
|
tn
|
SRR18054810
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938643
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938587
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911673
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4872317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11049512
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10679993
|
MDR-TB
|
lineage6.2.3
|
None
|
SRR25827382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28239689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8847010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370443
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR24256243
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662718
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3014617
|
MDR-TB
|
lineage4.1.2.1
|
tn
|
ERR4830160
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10679989
|
HR-TB
|
lineage6.2.2
|
None
|
ERR2516687
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR5864475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035191
|
Pre-XDR-TB
|
lineage4.8
|
pt
|
SRR13120436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370524
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510527
|
MDR-TB
|
lineage4.2.2.2
|
pk
|
SRR25515377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11551989
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29289201
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR10225472
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864476
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832108
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11551994
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799412
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR108469
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR29772431
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR688046
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29017020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11662438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12072601
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798599
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290716
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23938682
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709993
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR29052873
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR13267007
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR14802092
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14807469
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR3014621
|
MDR-TB
|
lineage4.1.2.1
|
tn
|
ERR5864479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798531
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR24112528
|
RR-TB
|
lineage2.2.2
|
None
|
SRR11662152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6256969
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29289202
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR5866437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866348
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266450
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4828103
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797940
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25827838
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864480
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662187
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043975
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23938619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828861
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28393360
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393813
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR5709815
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR10762464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510579
|
MDR-TB
|
lineage4.2.2.2
|
pk
|
SRR16088099
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13120435
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393330
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR133954
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR4423148
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4800306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11552010
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR16149144
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR11044004
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872331
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800544
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4553907
|
MDR-TB
|
lineage2.2
|
None
|
SRR28045460
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665580
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380098
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR403285
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR5266557
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11551992
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR553313
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184002
|
Pre-XDR-TB
|
lineage4.1.1.2
|
None
|
ERR2510605
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4553898
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11551981
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11551998
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13284167
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR5837709
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR1181014
|
Pre-XDR-TB
|
lineage4.1.1.2
|
None
|
SRR7653081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510526
|
MDR-TB
|
lineage3
|
pk
|
SRR11662160
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180346
|
Pre-XDR-TB
|
lineage4.1.1.2
|
None
|
SRR11662485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800074
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR13264948
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR13266495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975138
|
HR-TB
|
lineage4.3.4.2
|
None
|
ERR11798610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257031
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800079
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR3014607
|
Pre-XDR-TB
|
lineage4.1.2.1
|
tn
|
SAMN02585967
|
Pre-XDR-TB
|
lineage4.1.1.2
|
za
|
SRR29093805
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28240043
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR24112526
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11081072
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13261930
|
MDR-TB
|
lineage4.8
|
None
|
ERR8774242
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
SRR18591745
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4423475
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
SRR16088577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662373
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11551985
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1180362
|
Pre-XDR-TB
|
lineage4.1.1.2
|
None
|
SRR6257053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043789
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR28393940
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR24112527
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR14782461
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516374
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR13288946
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273131
|
MDR-TB
|
lineage4.5
|
None
|
ERR6336692
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR4796405
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR275181
|
Pre-XDR-TB
|
lineage4.8
|
pt
|
ERR5865343
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069406
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR6964501
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR1034614
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4872271
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11551987
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3014619
|
MDR-TB
|
lineage4.1.2.1
|
tn
|
SAMEA2535298
|
MDR-TB
|
lineage2.2.1
|
sz
|
SRR8847014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15600373
|
MDR-TB
|
lineage2.2.1.1;lineage4.8
|
None
|
ERR2510865
|
MDR-TB
|
lineage4.1.2.1
|
it
|
SRR22424779
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827580
|
MDR-TB
|
lineage3
|
None
|
SRR11662315
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796491
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799095
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR403227
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11551986
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9806887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866349
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680086
|
RR-TB
|
lineage4.8
|
None
|
SRR14801403
|
HR-TB
|
lineage4.2.1
|
None
|
ERR11551979
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR18714960
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR553312
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828113
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234672
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR29539583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799776
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13276149
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992840
|
XDR-TB
|
lineage4.3.2.1
|
None
|
ERR8665665
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR234589
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4828123
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797185
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13262167
|
XDR-TB
|
lineage2.2.1.1
|
None
|
SRR24709991
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017045
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29289200
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR13266897
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR13262055
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR13285764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13264955
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR13267017
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13288761
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR11043920
|
MDR-TB
|
lineage1.1.3.2
|
None
|
SRR26937101
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR13276174
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14801815
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11552000
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR8774353
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403297
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067665
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR117699
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR6964505
|
Pre-XDR-TB
|
lineage3
|
None
|