Run ID: SRR6257031
Sample name:
Date: 04-04-2023 13:23:36
Number of reads: 746195
Percentage reads mapped: 100.0
Strain: lineage2.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761140 | p.His445Arg | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289252 | c.-11A>C | upstream_gene_variant | 1.0 | pyrazinamide |
ethA | 4326855 | p.Arg207Gly | missense_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491014 | p.Thr78Pro | missense_variant | 0.25 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575220 | c.-128G>A | upstream_gene_variant | 0.14 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.25 |
ccsA | 620456 | p.Ala189Val | missense_variant | 0.1 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
rpoC | 766818 | p.His1150Arg | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777639 | p.Leu281Pro | missense_variant | 0.1 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304016 | c.1086C>A | synonymous_variant | 0.13 |
fbiC | 1304243 | p.Pro438Leu | missense_variant | 0.11 |
Rv1258c | 1406550 | p.Leu264Ser | missense_variant | 0.11 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1417184 | p.Leu55Pro | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472211 | n.366T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475729 | n.2072C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476333 | n.2676T>C | non_coding_transcript_exon_variant | 0.18 |
inhA | 1674554 | c.356delG | frameshift_variant | 0.1 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169265 | p.Ser450Gly | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714597 | p.Ala246Pro | missense_variant | 0.14 |
ahpC | 2726265 | p.Lys25Gln | missense_variant | 0.19 |
thyA | 3073715 | p.Pro253Ala | missense_variant | 1.0 |
thyA | 3073729 | p.Val248Glu | missense_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475318 | p.Gly438Arg | missense_variant | 0.17 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242755 | p.Ile965Phe | missense_variant | 0.13 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267539 | p.Pro433Leu | missense_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4268797 | p.Ala14Ser | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |