Rv2428 - c.-72C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
23 RR-TB
26 HR-TB
83 MDR-TB
34 Pre-XDR-TB
0 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 47 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 13 |
| lineage4.1.2.1 | 25 |
| lineage2.2.2 | 4 |
| lineage4.1.2 | 8 |
| lineage4.3.3 | 8 |
| lineage4.2.2.2 | 25 |
| lineage4.8 | 4 |
| lineage7 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.6.1.2 | 6 |
| lineage4.3.4.2 | 6 |
| lineage4.1.1 | 2 |
| lineage4.9 | 4 |
| lineage4.4 | 2 |
| lineage3 | 4 |
| lineage6.3.1 | 2 |
| lineage4.5 | 3 |
| lineage4.1.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.1 | 1 |
| lineage4.2.2 | 3 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage2.1 | 2 |
| lineage4.4.1.1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2;lineage4.1.2.1 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 184 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10610104 | MDR-TB | lineage2.2.1 | None | SRR15368789 | MDR-TB | lineage2.2.1 | None | SRR1723659 | MDR-TB | lineage2.2.1;lineage4.9 | None | SRR1172854 | MDR-TB | lineage2.2.1.1 | None | SRR17658031 | RR-TB | lineage4.1.2.1 | None | SRR5818616 | MDR-TB | lineage2.2.1 | dj | SRR16370537 | MDR-TB | lineage2.2.2 | None | SRR1167303 | MDR-TB | lineage4.1.2 | None | SRR29051225 | HR-TB | lineage4.3.3 | None | SRR1165366 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1166935 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR9992649 | MDR-TB | lineage2.2.1 | None | SRR1167151 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR10680086 | RR-TB | lineage4.8 | None | ERR7737753 | MDR-TB | lineage7 | None | ERR2446183 | MDR-TB | lineage4.2.2.2 | nl | SRR1724014 | HR-TB | lineage4.1.1.3 | cn | ERR3275336 | MDR-TB | lineage4.2.2.2 | nl | ERR1654674 | MDR-TB | lineage4.6.1.2 | None | SRR10040192 | MDR-TB | lineage2.2.1 | None | SRR25206973 | MDR-TB | lineage2.2.1 | None | SRR29231844 | MDR-TB | lineage4.6.1.2 | None | ERR4195615 | Sensitive | lineage4.3.4.2 | None | SRR29050915 | HR-TB | lineage4.1.1 | None | SRR6797332 | MDR-TB | lineage4.9 | None | ERR10610372 | MDR-TB | lineage2.2.1.1 | None | ERR7737624 | MDR-TB | lineage4.2.2.2 | None | SRR16058161 | Sensitive | lineage4.4 | None | ERR9121405 | Sensitive | lineage4.3.4.2 | None | SRR21277858 | MDR-TB | lineage2.2.1 | None | SRR15315980 | RR-TB | lineage2.2.1 | None | ERR2510631 | Pre-XDR-TB | lineage3 | pk | ERR2653175 | MDR-TB | lineage4.1.2.1 | None | ERR13260225 | MDR-TB | lineage4.1.2.1 | None | SRR17658029 | RR-TB | lineage4.1.2.1 | None | ERR552899 | MDR-TB | lineage2.2.1 | None | ERR13290600 | Pre-XDR-TB | lineage4.2.2.2 | None | SAMN02336788 | Pre-XDR-TB | lineage4.1.2 | za | SRR23650981 | HR-TB | lineage4.9 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | ERR4830822 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR3183991 | RR-TB | lineage6.3.1 | None | ERR13290598 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR671750 | Pre-XDR-TB | lineage4.5 | cn | SRR1173728 | MDR-TB | lineage2.2.1.1 | None | SRR671774 | Pre-XDR-TB | lineage4.5 | cn | SRR671799 | Pre-XDR-TB | lineage2.2.1 | cn | SRR13583390 | HR-TB | lineage4.1.2.1 | None | ERR4810959 | MDR-TB | lineage2.2.1 | cn | SRR6397670 | HR-TB | lineage4.1.1.1 | ca | ERR4830830 | Pre-XDR-TB | lineage4.2.2.2 | et | SRR10040146 | RR-TB | lineage4.4.2 | None | ERR751428 | HR-TB | lineage4.1.2.1 | pe | ERR751610 | HR-TB | lineage4.1.2.1 | pe | ERR4830803 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4830845 | MDR-TB | lineage4.2.2.2 | et | ERR4813356 | MDR-TB | lineage4.3.3 | pe | SAMEA2534152 | MDR-TB | lineage2.2.1 | uz | ERR133961 | HR-TB | lineage4.1.2.1 | ru | ERR245774 | HR-TB | lineage4.1.2.1 | mw | ERR144559 | HR-TB | lineage4.1.2.1 | ru | SRR17658032 | RR-TB | lineage4.1.2.1 | None | SRR6832050 | HR-TB | lineage4.3.3 | None | SRR29050650 | HR-TB | lineage4.1.2.1 | None | ERR10680100 | MDR-TB | lineage4.1 | None | SRR29772515 | MDR-TB | lineage2.2.1.1 | None | ERR551731 | RR-TB | lineage2.2.1 | None | SRR16370547 | MDR-TB | lineage4.2.2 | None | ERR10680176 | MDR-TB | lineage4.1.2.1 | None | SRR25534575 | Pre-XDR-TB | lineage2.2.1 | None | SRR3082088 | MDR-TB | lineage2.2.1 | None | SRR29017566 | MDR-TB | lineage4.3.4.1 | None | ERR10680066 | RR-TB | lineage4.1.1.1 | None | SRR1175145 | MDR-TB | lineage2.2.1.1 | None | ERR13284954 | Sensitive | lineage4.1.2.1 | None | SRR15904139 | MDR-TB | lineage2.2.2 | None | SRR671769 | Pre-XDR-TB | lineage4.5 | cn | ERR552900 | MDR-TB | lineage2.2.1 | None | ERR9806839 | MDR-TB | lineage2.2.1 | None | ERR126642 | HR-TB | lineage4.1.1.3 | mw | ERR9125564 | Sensitive | lineage4.4 | None | ERR552900_ERR552901_ERR552899 | MDR-TB | lineage2.2.1 | None | ERR1035356 | Pre-XDR-TB | lineage4.3.4.2 | br | ERR10680197 | MDR-TB | lineage4.3.3 | None | SRR10305947 | HR-TB | lineage2.2.1 | None | SRR17658030 | RR-TB | lineage4.1.2.1 | None | DRR130107 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260485 | MDR-TB | lineage4.3.4.2.1 | None | ERR13258368 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806630 | MDR-TB | lineage2.2.1.1 | None | SRR1173542 | MDR-TB | lineage4.1.2 | None | ERR13290601 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29051536 | Other | lineage4.1.2.1 | None | SRR13583437 | HR-TB | lineage4.3.3 | None | SRR1013529 | Pre-XDR-TB | lineage4.1.2 | None | SRR17657979 | RR-TB | lineage4.1.2.1 | None | ERR4195808 | Sensitive | lineage4.3.4.2 | None | SRR25515393 | MDR-TB | lineage2.2.1 | None | SRR21277617 | Other | lineage2.2.1.1 | None | SRR15369028 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231815 | MDR-TB | lineage4.6.1.2 | None | SRR1173820 | MDR-TB | lineage4.1.2 | None | ERR13290599 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR4815378 | Sensitive | lineage3 | None | SRR15316368 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969896 | MDR-TB | lineage2.1 | None | ERR4830539 | MDR-TB | lineage2.2.1 | None | SRR17658033 | RR-TB | lineage4.1.2.1 | None | SRR29385434 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651658 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02414970 | Pre-XDR-TB | lineage4.2.2.2 | se | SAMN02403637 | MDR-TB | lineage4.1.2 | za | ERR3287622 | HR-TB | lineage4.1.2.1 | pe | SRR15723195 | Other | lineage2.2.1 | None | SRR28240166 | HR-TB | lineage4.8 | None | SRR1062866 | Pre-XDR-TB | lineage4.1.2 | None | ERR3287590 | MDR-TB | lineage4.4.1.1 | pe | ERR751837 | MDR-TB | lineage2.2.1 | th | ERR718273 | MDR-TB | lineage2.2.1 | th | ERR12796623 | MDR-TB | lineage3 | None | SRR6397665 | RR-TB | lineage2.2.1 | ca | SRR6397630 | RR-TB | lineage2.2.1 | ca | ERR552901 | MDR-TB | lineage2.2.1 | None | SRR28119743 | MDR-TB | lineage2.2.1.1 | None | ERR7911117 | MDR-TB | lineage2.2.2 | vn | ERR2707057 | MDR-TB | lineage4.6.1.2 | cd | ERR2707123 | MDR-TB | lineage4.6.1.2 | cd | ERR4812885 | HR-TB | lineage2.2.1 | pe | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | ERR502937 | MDR-TB | lineage2.2.1 | None | ERR4831637 | MDR-TB | lineage2.1 | vn | ERR4011971 | MDR-TB | lineage4.2.2.2 | None | ERR2510509 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR841496 | RR-TB | lineage6.3.1 | None | SRR1173217 | MDR-TB | lineage2.2.1.1 | None | SRR15014678 | MDR-TB | lineage2.2.1.1 | None | ERR4821152 | Sensitive | lineage3.1.2 | gb | ERR2515993 | HR-TB | lineage4.1.2.1 | za | ERR144618 | HR-TB | lineage2.2;lineage4.1.2.1 | ru | SRR6824435 | MDR-TB | lineage2.2.1.1 | cn | SRR3085339 | MDR-TB | lineage2.2.1 | None | SRR25206969 | RR-TB | lineage2.2.1 | None | SRR17657934 | RR-TB | lineage4.1.2.1 | None | SRR23339945 | MDR-TB | lineage4.2.2 | None | ERR2517569 | MDR-TB | lineage4.2.2.2 | nl | ERR11081248 | Sensitive | lineage4.1.2.1 | None | SRR1162897 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR15316366 | Pre-XDR-TB | lineage2.2.1 | None | ERR12268385 | HR-TB | lineage4.8 | None | ERR13285156 | RR-TB | lineage4.2.2.2 | None | SRR10303294 | MDR-TB | lineage4.3.3 | None | ERR551730_ERR551731 | RR-TB | lineage2.2.1 | None | SRR1165297 | MDR-TB | lineage4.1.2 | None | ERR11080910 | RR-TB | lineage4.2.2.2 | None | ERR10680198 | MDR-TB | lineage4.3.3 | None | SRR29096626 | MDR-TB | lineage4.2.2.2 | None | ERR2179621 | HR-TB | lineage4.1.1.3 | cn | SRR29096523 | MDR-TB | lineage4.2.2.2 | None | SRR21727895 | Other | lineage2.2.1 | None | ERR9121741 | Sensitive | lineage4.3.4.2 | None | SRR17658028 | RR-TB | lineage4.1.2.1 | None | SRR12420460 | MDR-TB | lineage2.2.2 | None | SRR13583315 | HR-TB | lineage4.1.1 | None | SRR28119789 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | ERR551730 | RR-TB | lineage2.2.1 | None | SRR6855833 | HR-TB | lineage4.1.2.1 | None | SRR10430319 | MDR-TB | lineage4.3.3 | None | ERR1035358 | Pre-XDR-TB | lineage4.3.4.2 | br | SRR29050905 | Sensitive | lineage4.3.4.1 | None | ERR13275937 | HR-TB | lineage4.2.1 | None | SRR2101037 | Other | lineage4.9 | None | ERR294245 | Other | lineage4.9 | None | SAMN02599095 | MDR-TB | lineage2.2.1.1 | in | SAMN02599096 | MDR-TB | lineage2.2.1.1 | in | ERR4810566 | Sensitive | lineage2.2.1 | cn | ERR7911325 | MDR-TB | lineage4.2.2 | vn | ERR4810991 | RR-TB | lineage2.2.1 | cn | ERR7737654 | MDR-TB | lineage4.2.2.2 | None | SRR671770 | Pre-XDR-TB | lineage2.2.1 | cn | SRR20139560 | MDR-TB | lineage4.8 | None | ERR1199096 | MDR-TB | lineage4.6.1.2 | cd | SAMEA2534988 | MDR-TB | lineage2.2.1 | uz | SRR6339642 | MDR-TB | lineage3 | au |
|---|
