Run ID: ERR11049338
Sample name:
Date: 31-03-2023 22:24:41
Number of reads: 4955944
Percentage reads mapped: 99.47
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7361 | c.60C>T | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.17 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.21 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.19 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.2 |
inhA | 1673496 | c.-706G>A | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.36 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.21 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.76 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.29 |
fbiD | 3339749 | p.Val211Gly | missense_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.38 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.29 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.3 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.25 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.66 |
clpC1 | 4038408 | p.Pro766Leu | missense_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.21 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.34 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.32 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |