Run ID: ERR11049912
Sample name:
Date: 02-04-2023 02:43:15
Number of reads: 3815823
Percentage reads mapped: 99.47
Strain: lineage3.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 | 1.0 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.33 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576479 | p.Pro378Ala | missense_variant | 0.18 |
mshA | 576606 | p.Ala420Gly | missense_variant | 0.17 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.21 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.2 |
rpoC | 764534 | p.Arg389Gly | missense_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.3 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476058 | n.2401T>G | non_coding_transcript_exon_variant | 0.2 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.41 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.17 |
PPE35 | 2170461 | p.Gly51Glu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 0.99 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.33 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.25 |
Rv2752c | 3065952 | c.240C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.14 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.25 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.69 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474212 | p.Lys69Thr | missense_variant | 0.15 |
whiB7 | 3568425 | c.255T>C | synonymous_variant | 0.29 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.29 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.69 |
clpC1 | 4040550 | p.Leu52Trp | missense_variant | 0.2 |
embC | 4240172 | p.Val104Met | missense_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.2 |
embC | 4241562 | p.Arg567His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243682 | c.450T>G | synonymous_variant | 0.17 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.52 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.23 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.18 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |