Run ID: ERR11050519
Sample name:
Date: 03-04-2023 08:27:26
Number of reads: 4222280
Percentage reads mapped: 99.44
Strain: lineage4.2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
lineage4.2.2.1 | Euro-American | LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.14 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.19 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.23 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.38 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.4 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.27 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.37 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.32 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.28 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.12 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.12 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.79 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.26 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568431 | p.Arg83Gly | missense_variant | 0.36 |
alr | 3841568 | c.-148G>A | upstream_gene_variant | 1.0 |
alr | 3841570 | c.-151delA | upstream_gene_variant | 1.0 |
alr | 3841574 | c.-154T>G | upstream_gene_variant | 1.0 |
alr | 3841578 | c.-158G>T | upstream_gene_variant | 1.0 |
alr | 3841582 | c.-162A>G | upstream_gene_variant | 1.0 |
alr | 3841584 | c.-164C>A | upstream_gene_variant | 1.0 |
alr | 3841589 | c.-170delG | upstream_gene_variant | 1.0 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.25 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.71 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.26 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.32 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.22 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |