Run ID: ERR181314
Sample name:
Date: 21-10-2023 06:01:51
Number of reads: 11929521
Percentage reads mapped: 99.21
Strain: lineage9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage9 | Lineage 9 | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 6610 | c.-692C>A | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775854 | p.Gly876Asp | missense_variant | 0.99 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.99 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781739 | c.180G>A | synonymous_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.99 |
atpE | 1461251 | c.207G>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471670 | n.-176G>C | upstream_gene_variant | 0.99 |
rrs | 1471970 | n.125G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475017 | n.1360G>A | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674434 | p.Val78Ala | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102072 | p.Ala324Val | missense_variant | 0.99 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154871 | p.Lys414Arg | missense_variant | 0.99 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168922 | p.Thr564Arg | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
pepQ | 2860561 | c.-143C>A | upstream_gene_variant | 0.99 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
ald | 3087782 | c.963G>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
Rv3236c | 3612129 | p.Leu330Ile | missense_variant | 0.99 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241489 | p.Ala543Thr | missense_variant | 1.0 |
embC | 4241903 | p.Phe681Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 0.99 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 0.99 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326887 | p.Asp196Ala | missense_variant | 1.0 |
ethR | 4327105 | c.-444G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407876 | c.327C>T | synonymous_variant | 1.0 |
gid | 4408309 | c.-107A>C | upstream_gene_variant | 0.99 |
gid | 4408457 | c.-255A>G | upstream_gene_variant | 0.99 |