Run ID: ERR233357
Sample name:
Date: 27-03-2023 11:50:21
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4327054 | p.Tyr140* | stop_gained | 0.11 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576184 | c.837A>C | synonymous_variant | 0.19 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.28 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.19 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1416232 | p.Cys372Gly | missense_variant | 0.11 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.15 |
rrs | 1471658 | n.-188T>G | upstream_gene_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473343 | n.1498G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473360 | n.1515T>G | non_coding_transcript_exon_variant | 0.3 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.27 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.22 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918023 | c.84C>T | synonymous_variant | 1.0 |
tlyA | 1918069 | p.Thr44Pro | missense_variant | 0.2 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.18 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154793 | p.Asp440Gly | missense_variant | 0.24 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.15 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.24 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223318 | c.-154A>C | upstream_gene_variant | 1.0 |
kasA | 2518144 | c.29dupG | frameshift_variant | 0.12 |
kasA | 2518891 | c.777C>A | synonymous_variant | 0.16 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.17 |
ahpC | 2726550 | p.Gln120Lys | missense_variant | 0.15 |
folC | 2747218 | p.Ile127Met | missense_variant | 0.18 |
ribD | 2987392 | p.Arg185Pro | missense_variant | 0.17 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.24 |
thyA | 3073890 | p.Leu194Phe | missense_variant | 0.18 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.16 |
Rv3083 | 3448929 | p.Tyr142* | stop_gained | 0.12 |
Rv3083 | 3449058 | p.Ser185Arg | missense_variant | 0.24 |
Rv3083 | 3449673 | p.Tyr390* | stop_gained | 0.17 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.16 |
rpoA | 3878601 | c.-94C>G | upstream_gene_variant | 0.3 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.19 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.32 |
ddn | 3987076 | p.Ser78Tyr | missense_variant | 1.0 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.14 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.17 |
clpC1 | 4040516 | c.189C>T | synonymous_variant | 0.98 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.21 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.26 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243977 | p.Ala249Pro | missense_variant | 0.17 |
embA | 4244375 | c.1143C>G | synonymous_variant | 0.14 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.21 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |