Run ID: ERR2512693
Sample name:
Date: 31-03-2023 19:11:36
Number of reads: 1615184
Percentage reads mapped: 98.25
Strain: lineage1.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.1 | Indo-Oceanic | EAI3;EAI4;EAI5;EAI6 | RD239 | 1.0 |
lineage1.1.2 | Indo-Oceanic | EAI3;EAI5 | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.86 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrB | 6124 | c.885C>T | synonymous_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 760490 | c.684C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 765171 | p.Pro601Leu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776395 | p.Phe696Leu | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304852 | p.Gly641Asp | missense_variant | 0.5 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472133 | n.288G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473101 | n.1256C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.36 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167983 | p.Gly877Asp | missense_variant | 1.0 |
PPE35 | 2170785 | c.-173T>C | upstream_gene_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518173 | p.Thr20Ile | missense_variant | 1.0 |
eis | 2715016 | p.Arg106His | missense_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064632 | c.1560C>T | synonymous_variant | 1.0 |
Rv2752c | 3065419 | p.Arg258Leu | missense_variant | 1.0 |
thyA | 3074648 | c.-177T>G | upstream_gene_variant | 0.32 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
Rv3236c | 3613309 | c.-193G>A | upstream_gene_variant | 1.0 |
rpoA | 3878575 | c.-68C>A | upstream_gene_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243848 | p.Val206Met | missense_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4249509 | p.Pro999Leu | missense_variant | 0.12 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
ubiA | 4269523 | p.Thr104Ile | missense_variant | 0.98 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.94 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |