Run ID: ERR2514065
Sample name:
Date: 31-03-2023 20:06:05
Number of reads: 5611053
Percentage reads mapped: 99.46
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gid | 4408100 | c.102delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6674 | p.Leu479Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575821 | c.474G>A | synonymous_variant | 0.17 |
ccsA | 619866 | c.-25C>A | upstream_gene_variant | 0.14 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762743 | c.-627G>A | upstream_gene_variant | 0.14 |
rpoB | 762746 | p.Gln980His | missense_variant | 0.12 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.99 |
mmpS5 | 778662 | p.Asp82His | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
eis | 2714848 | p.Ser162Asn | missense_variant | 0.15 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ribD | 2987337 | p.Gly167Cys | missense_variant | 0.12 |
Rv2752c | 3065825 | p.Pro123Ser | missense_variant | 1.0 |
thyX | 3067428 | p.Ala173Val | missense_variant | 1.0 |
thyX | 3067540 | p.Ala136Thr | missense_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474942 | c.936G>A | synonymous_variant | 0.22 |
fprA | 3475302 | c.1296C>T | synonymous_variant | 0.12 |
fprA | 3475373 | p.Gly456Asp | missense_variant | 0.33 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243643 | c.411C>T | synonymous_variant | 0.12 |
embB | 4247693 | p.Ala394Thr | missense_variant | 0.5 |
embB | 4247731 | c.1218C>T | synonymous_variant | 0.17 |
embB | 4247790 | p.Ser426Asn | missense_variant | 0.22 |
embB | 4249337 | p.Asp942His | missense_variant | 0.11 |
whiB6 | 4338426 | c.96C>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338704 | c.-183C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |