Run ID: ERR2514399
Sample name:
Date: 31-03-2023 20:18:44
Number of reads: 5167246
Percentage reads mapped: 99.34
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
tlyA | 1918139 | p.Ala67Glu | missense_variant | 0.5 | capreomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6233 | p.Ala332Thr | missense_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575265 | c.-83C>T | upstream_gene_variant | 0.18 |
ccsA | 620168 | p.Ala93Val | missense_variant | 0.12 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 0.99 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304125 | p.Val399Ile | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475008 | n.1351C>A | non_coding_transcript_exon_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103221 | c.-179C>T | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169204 | c.1407_1408delAA | frameshift_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2519089 | c.975C>T | synonymous_variant | 0.33 |
eis | 2715014 | p.Arg107Cys | missense_variant | 0.15 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
thyX | 3067289 | c.657C>T | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642225 | p.Gln231Lys | missense_variant | 0.29 |
alr | 3841013 | c.408C>T | synonymous_variant | 0.18 |
embC | 4240480 | c.618G>T | synonymous_variant | 0.12 |
embC | 4240512 | p.Ser217Thr | missense_variant | 0.17 |
embC | 4240564 | p.Met234Ile | missense_variant | 0.22 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242530 | p.Arg890* | stop_gained | 1.0 |
embC | 4242641 | p.Arg927Cys | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |