Run ID: ERR2659157
Sample name:
Date: 31-03-2023 22:45:53
Number of reads: 6510964
Percentage reads mapped: 98.46
Strain:
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5073 | c.-167G>A | upstream_gene_variant | 0.13 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 0.96 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576144 | p.Arg266His | missense_variant | 0.82 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.95 |
fbiC | 1305410 | p.Ala827Asp | missense_variant | 0.19 |
Rv1258c | 1407501 | c.-161C>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474103 | n.446A>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101948 | c.1095C>T | synonymous_variant | 1.0 |
ndh | 2103021 | c.21dupC | frameshift_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2222658 | c.507C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2714845 | c.487delG | frameshift_variant | 0.95 |
ribD | 2986640 | c.-199C>T | upstream_gene_variant | 0.9 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
ald | 3087858 | p.Glu347Lys | missense_variant | 0.93 |
Rv3083 | 3449580 | p.Ile359Met | missense_variant | 0.92 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474623 | p.Ala206Glu | missense_variant | 0.93 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3642538 | p.Val335Ala | missense_variant | 1.0 |
rpoA | 3877535 | p.Val325Phe | missense_variant | 0.97 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242313 | c.-920C>A | upstream_gene_variant | 0.95 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4249689 | p.Arg1059His | missense_variant | 0.22 |
aftB | 4268014 | p.Pro275Ser | missense_variant | 0.14 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethR | 4327375 | c.-174G>T | upstream_gene_variant | 0.97 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407850 | p.Arg118Pro | missense_variant | 0.86 |