Run ID: ERR3287355
Sample name:
Date: 01-04-2023 01:22:12
Number of reads: 3729291
Percentage reads mapped: 99.69
Strain: lineage4.7;lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.75 |
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.28 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.73 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 0.26 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.72 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.75 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.76 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.78 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.68 |
ccsA | 619822 | c.-69G>T | upstream_gene_variant | 0.38 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.77 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.77 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.75 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.76 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.72 |
mmpS5 | 779630 | c.-725T>C | upstream_gene_variant | 0.72 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.76 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475721 | n.2064C>T | non_coding_transcript_exon_variant | 0.3 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.85 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.71 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.71 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3067039 | c.-848T>C | upstream_gene_variant | 0.64 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.84 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.75 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.75 |
rpoA | 3878569 | c.-63delG | upstream_gene_variant | 0.38 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.71 |
embB | 4249732 | c.3219C>G | synonymous_variant | 0.34 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.58 |
whiB6 | 4338591 | c.-70G>C | upstream_gene_variant | 0.29 |
whiB6 | 4338592 | c.-71G>T | upstream_gene_variant | 0.29 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.72 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.73 |