Run ID: ERR4797494
Sample name:
Date: 01-04-2023 07:41:58
Number of reads: 3089078
Percentage reads mapped: 99.45
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7271 | c.-31A>T | upstream_gene_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 765569 | c.2202delC | frameshift_variant | 0.11 |
rpoC | 766242 | p.Thr958Ile | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777820 | c.661C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474922 | n.1265G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475456 | n.1799T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475854 | n.2197G>A | non_coding_transcript_exon_variant | 0.13 |
inhA | 1674975 | c.774C>A | synonymous_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918335 | c.396G>A | synonymous_variant | 0.11 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168651 | p.Leu654Phe | missense_variant | 1.0 |
Rv1979c | 2223116 | p.Cys17Ser | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
pncA | 2289470 | c.-229C>A | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2747788 | c.-190C>A | upstream_gene_variant | 0.11 |
pepQ | 2860099 | p.Leu107Pro | missense_variant | 0.13 |
pepQ | 2860399 | p.Arg7Gln | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448912 | p.Ile137Val | missense_variant | 0.15 |
Rv3083 | 3449171 | p.Val223Asp | missense_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474948 | c.942A>G | synonymous_variant | 0.17 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
rpoA | 3878500 | p.Ile3Thr | missense_variant | 0.14 |
clpC1 | 4039891 | p.Val272Met | missense_variant | 0.11 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243362 | p.Phe44Leu | missense_variant | 0.11 |
embA | 4244550 | p.Ala440Thr | missense_variant | 0.15 |
embB | 4247123 | p.Ala204Ser | missense_variant | 0.12 |
embB | 4247427 | p.Gly305Asp | missense_variant | 0.12 |
aftB | 4267756 | p.Lys361Glu | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |