Run ID: ERR4817307
Sample name:
Date: 01-04-2023 14:55:13
Number of reads: 1488741
Percentage reads mapped: 95.69
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.67 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766210 | c.2841G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777820 | c.661C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304676 | c.1746A>C | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473301 | n.1456T>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2153992 | p.Leu707Arg | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168651 | p.Leu654Phe | missense_variant | 1.0 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.14 |
Rv1979c | 2223168 | c.-4T>C | upstream_gene_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.99 |
folC | 2746235 | p.Asp455Ala | missense_variant | 0.25 |
pepQ | 2860399 | p.Arg7Gln | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449873 | p.Lys457Thr | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |