Run ID: ERR4819171
Sample name:
Date: 01-04-2023 15:57:49
Number of reads: 3239889
Percentage reads mapped: 98.25
Strain: lineage1.2.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 1.0 |
lineage1.2.2.2 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 1.0 |
gyrB | 5530 | c.291C>T | synonymous_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620586 | c.696C>T | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 765889 | c.2520C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777155 | c.1326G>C | synonymous_variant | 0.95 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302948 | c.18T>G | synonymous_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472138 | n.293C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472147 | n.302G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472194 | n.349G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1473924 | n.267A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474734 | n.1077G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168742 | p.Gly624Asp | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3064889 | p.Lys435Glu | missense_variant | 1.0 |
Rv2752c | 3066103 | p.Asn30Ser | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3474661 | p.Asp219Asn | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 1.0 |
alr | 3841568 | c.-148G>A | upstream_gene_variant | 1.0 |
alr | 3841570 | c.-151delA | upstream_gene_variant | 1.0 |
alr | 3841574 | c.-154T>G | upstream_gene_variant | 1.0 |
alr | 3841578 | c.-158G>T | upstream_gene_variant | 1.0 |
alr | 3841582 | c.-162A>G | upstream_gene_variant | 1.0 |
alr | 3841584 | c.-164C>A | upstream_gene_variant | 1.0 |
alr | 3841589 | c.-170delG | upstream_gene_variant | 1.0 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338635 | c.-114A>C | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |