TB-Profiler result

Run: ERR713575
Summary

Run ID: ERR713575

Sample name:

Date: 02-08-2023 15:50:02

Number of reads: NA

Percentage reads mapped: NA

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrB 6989 p.Asp584Tyr missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8558 c.1257C>G synonymous_variant 1.0
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620244 c.354C>T synonymous_variant 1.0
rpoB 759741 c.-66C>T upstream_gene_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 766044 p.Gln892Pro missense_variant 1.0
rpoC 766969 c.3600C>T synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpS5 779682 c.-777G>A upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
fbiC 1303145 p.Ser72Leu missense_variant 1.0
fbiC 1304475 c.1545G>A synonymous_variant 1.0
embR 1417373 c.-26G>A upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1476160 n.2503T>G non_coding_transcript_exon_variant 1.0
rpsA 1834833 p.Gln431Arg missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103015 p.Gln10Lys missense_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156412 c.-301C>T upstream_gene_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168452 p.Ile721Val missense_variant 1.0
PPE35 2170344 p.Ala90Asp missense_variant 1.0
Rv1979c 2222128 p.Tyr346Cys missense_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2288899 p.Pro115Ser missense_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
kasA 2518886 p.Gly258Ser missense_variant 1.0
eis 2715059 p.Arg92Gly missense_variant 1.0
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
Rv3236c 3612084 p.Gly345Ser missense_variant 1.0
Rv3236c 3612780 c.337T>C synonymous_variant 1.0
fbiB 3642791 p.Glu419Asp missense_variant 1.0
rpoA 3877535 p.Val325Phe missense_variant 1.0
clpC1 4039304 p.Gln467His missense_variant 1.0
clpC1 4039832 c.873C>G synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4241258 c.1396C>A synonymous_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0