Run ID: SRR13861339
Sample name:
Date: 03-04-2023 09:29:19
Number of reads: 2740627
Percentage reads mapped: 68.58
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.15 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5760 | p.Trp174Leu | missense_variant | 1.0 |
gyrB | 6662 | p.Phe475Val | missense_variant | 1.0 |
rpoB | 760087 | p.Ser94Phe | missense_variant | 0.99 |
rpoC | 766854 | p.Leu1162Gln | missense_variant | 1.0 |
mmpL5 | 778416 | p.Pro22Leu | missense_variant | 1.0 |
rplC | 801126 | c.318C>T | synonymous_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475354 | n.1697A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674867 | p.Trp222Cys | missense_variant | 1.0 |
katG | 2154601 | p.Gly504Val | missense_variant | 1.0 |
Rv1979c | 2222910 | c.255A>G | synonymous_variant | 1.0 |
pepQ | 2859714 | c.705C>A | synonymous_variant | 1.0 |
ald | 3087172 | p.Glu118Ala | missense_variant | 1.0 |
ald | 3087905 | c.1086G>A | synonymous_variant | 1.0 |
fprA | 3475069 | c.1064dupA | frameshift_variant&stop_gained | 1.0 |
Rv3236c | 3613280 | c.-164G>C | upstream_gene_variant | 1.0 |
alr | 3841499 | c.-79C>T | upstream_gene_variant | 1.0 |
rpoA | 3878156 | p.Val118Met | missense_variant | 1.0 |
clpC1 | 4039113 | p.Ala531Asp | missense_variant | 1.0 |
embC | 4242095 | p.Ala745Pro | missense_variant | 1.0 |
embB | 4247621 | c.1108C>T | synonymous_variant | 1.0 |
aftB | 4269585 | c.-749G>A | upstream_gene_variant | 1.0 |
ubiA | 4269776 | p.Ala20Pro | missense_variant | 1.0 |
ethA | 4328211 | c.-739delG | upstream_gene_variant | 1.0 |