TB-Profiler result

Run: SRR13861469
Summary

Run ID: SRR13861469

Sample name:

Date: 03-04-2023 09:32:30

Number of reads: 64454

Percentage reads mapped: 6.45

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761234 c.1428G>C synonymous_variant 1.0
rpoB 761235 p.Met477Val missense_variant 1.0
rpsL 781503 c.-57T>C upstream_gene_variant 1.0
fbiC 1303099 c.170dupA frameshift_variant 1.0
fbiC 1304043 c.1116delC frameshift_variant 1.0
Rv1258c 1406861 p.Ile160Met missense_variant 1.0
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.67
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.6
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.6
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.6
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.6
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.6
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.6
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.6
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.6
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.6
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.6
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.6
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.55
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.55
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.55
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.55
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.55
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.5
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.5
rrl 1474235 n.578G>T non_coding_transcript_exon_variant 1.0
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.89
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 1.0
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 1.0
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 1.0
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 1.0
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 1.0
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 1.0
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 1.0
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 1.0
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 1.0
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 1.0
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 1.0
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 1.0
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.94
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.94
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.94
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.94
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.83
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.67
rrl 1476576 n.2919C>G non_coding_transcript_exon_variant 1.0
fbiD 3339396 c.279C>T synonymous_variant 1.0
embB 4248368 p.Leu619Val missense_variant 1.0
ethA 4327082 p.Cys131Ser missense_variant 1.0
ethA 4327097 p.Leu126His missense_variant 1.0