Run ID: SRR18910161
Sample name:
Date: 03-04-2023 20:38:38
Number of reads: 801753
Percentage reads mapped: 95.82
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8688 | p.Ala463Thr | missense_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576778 | c.1431G>A | synonymous_variant | 0.14 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 760404 | p.Pro200Ala | missense_variant | 0.13 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 765698 | c.2332dupT | frameshift_variant | 0.12 |
rpoC | 766891 | c.3527delT | frameshift_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775807 | p.Met892Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777076 | p.Ala469Ser | missense_variant | 0.12 |
mmpL5 | 779202 | c.-722G>A | upstream_gene_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473456 | n.-202C>T | upstream_gene_variant | 0.11 |
rrl | 1474252 | n.595T>C | non_coding_transcript_exon_variant | 0.13 |
inhA | 1674542 | p.Ala114Val | missense_variant | 0.29 |
inhA | 1674848 | p.Gln216Arg | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101712 | p.Gln444Leu | missense_variant | 0.11 |
ndh | 2101792 | p.Trp417Cys | missense_variant | 0.11 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167792 | p.Ser941Pro | missense_variant | 0.25 |
PPE35 | 2167865 | c.2748G>C | synonymous_variant | 0.15 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.12 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2518406 | p.Ala98Thr | missense_variant | 0.18 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
folC | 2746660 | c.938delT | frameshift_variant | 0.25 |
Rv2752c | 3065192 | p.Ile334Val | missense_variant | 0.11 |
Rv2752c | 3065388 | c.804C>G | synonymous_variant | 0.12 |
Rv2752c | 3066347 | c.-156T>C | upstream_gene_variant | 0.14 |
Rv2752c | 3067167 | c.-976C>A | upstream_gene_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087295 | p.Leu159Pro | missense_variant | 0.11 |
Rv3083 | 3448331 | c.-173G>C | upstream_gene_variant | 0.22 |
Rv3083 | 3448899 | c.396C>A | synonymous_variant | 0.11 |
Rv3083 | 3449175 | c.672C>T | synonymous_variant | 0.12 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |