Run ID: SRR19428492
Sample name:
Date: 03-04-2023 21:38:02
Number of reads: 1522107
Percentage reads mapped: 99.55
Strain: lineage3.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1.1 | East-African-Indian | CAS1-Kili | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490705 | c.-78T>C | upstream_gene_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.99 |
mshA | 575532 | p.Thr62Ile | missense_variant | 0.15 |
mshA | 575746 | c.399C>T | synonymous_variant | 0.12 |
mshA | 576119 | p.Ala258Ser | missense_variant | 0.13 |
mshA | 576598 | p.Met417Ile | missense_variant | 0.33 |
ccsA | 620187 | c.297C>G | synonymous_variant | 0.15 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764014 | c.645G>A | synonymous_variant | 0.15 |
rpoC | 764528 | p.Arg387Cys | missense_variant | 0.22 |
rpoC | 766134 | p.Ala922Gly | missense_variant | 0.33 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304284 | p.Ala452Ser | missense_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834961 | c.1420C>A | synonymous_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102221 | p.Lys274Asn | missense_variant | 0.11 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170461 | p.Gly51Glu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 0.98 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
pepQ | 2860028 | p.Leu131Met | missense_variant | 0.5 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3641602 | p.Phe23Ser | missense_variant | 0.14 |
embC | 4240172 | p.Val104Met | missense_variant | 1.0 |
embC | 4241562 | p.Arg567His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242183 | p.Ala774Asp | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247760 | p.Tyr416Cys | missense_variant | 0.25 |
aftB | 4268431 | p.Thr136Ala | missense_variant | 0.29 |
ubiA | 4269452 | p.Met128Leu | missense_variant | 1.0 |
ubiA | 4270012 | c.-179G>T | upstream_gene_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407742 | p.Arg154Gln | missense_variant | 1.0 |