Run ID: SRR21277760
Sample name:
Date: 04-04-2023 01:39:25
Number of reads: 8737676
Percentage reads mapped: 99.3
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575427 | p.Ser27* | stop_gained | 0.25 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 619714 | c.-177G>A | upstream_gene_variant | 0.12 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 761672 | c.1866C>A | synonymous_variant | 0.11 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476202 | n.2545G>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155766 | p.His116Asn | missense_variant | 0.11 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518120 | c.6T>C | synonymous_variant | 0.99 |
kasA | 2519054 | p.Ala314Thr | missense_variant | 0.15 |
eis | 2715578 | c.-246C>T | upstream_gene_variant | 0.2 |
folC | 2746312 | c.1287G>T | synonymous_variant | 0.1 |
folC | 2746346 | p.Ala418Glu | missense_variant | 0.11 |
folC | 2746636 | c.963C>A | synonymous_variant | 0.11 |
pepQ | 2859605 | p.Gly272Trp | missense_variant | 0.14 |
pepQ | 2859932 | p.Leu163Met | missense_variant | 0.1 |
ribD | 2987317 | p.Ala160Asp | missense_variant | 0.1 |
thyX | 3067298 | c.648G>A | synonymous_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339722 | p.Gly202Val | missense_variant | 0.12 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474945 | c.939G>A | synonymous_variant | 0.12 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.99 |
alr | 3841042 | p.Asp127Tyr | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242686 | p.Gln942* | stop_gained | 0.17 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244876 | c.1644G>A | synonymous_variant | 0.1 |
embB | 4247860 | c.1347G>A | synonymous_variant | 0.1 |
embB | 4247895 | p.Pro461Leu | missense_variant | 0.15 |
embB | 4248607 | c.2094G>T | synonymous_variant | 0.14 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338365 | p.Cys53Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |