Run ID: SRR4033149
Sample name:
Date: 04-04-2023 05:51:32
Number of reads: 1312712
Percentage reads mapped: 95.1
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7323 | p.Pro8Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.88 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776659 | p.Asp608Asn | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472733 | n.888G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472742 | n.897C>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475144 | n.1487G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475154 | n.1497C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475163 | n.1506T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168501 | p.Phe704Leu | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.26 |
PPE35 | 2170362 | p.Glu84Gly | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.27 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.36 |
thyA | 3074519 | c.-48C>A | upstream_gene_variant | 0.33 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878381 | c.127C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243271 | c.39A>T | synonymous_variant | 0.12 |
embA | 4243290 | p.Ser20Ala | missense_variant | 1.0 |
embB | 4247121 | p.Ser203Leu | missense_variant | 1.0 |
aftB | 4267834 | p.His335Tyr | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408397 | c.-195A>G | upstream_gene_variant | 1.0 |