Run ID: SRR6045432
Sample name:
Date: 20-10-2023 18:08:16
Number of reads: 1703326
Percentage reads mapped: 92.41
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.8 |
inhA | 1674993 | c.792G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612277 | c.840G>C | synonymous_variant | 1.0 |
clpC1 | 4039667 | p.Gln346His | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268504 | c.333G>T | synonymous_variant | 1.0 |
ethA | 4328046 | c.-573C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |