Run ID: SRR6280132
Sample name:
Date: 18-08-2022 08:45:09
Number of reads: 2798801
Percentage reads mapped: 57.56
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.98 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476433 | n.2776C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
kasA | 2518910 | c.796C>T | synonymous_variant | 0.16 |
thyX | 3067374 | p.Ala191Val | missense_variant | 0.97 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |