Run ID: SRR6896577
Sample name:
Date: 04-04-2023 18:10:28
Number of reads: 688955
Percentage reads mapped: 99.27
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7164 | p.Ala642Asp | missense_variant | 0.1 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7717 | p.Met139Thr | missense_variant | 0.92 |
fgd1 | 491293 | p.Pro171Thr | missense_variant | 0.12 |
mshA | 576316 | c.969A>G | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472678 | n.833T>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472701 | n.856T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475030 | n.1373G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475847 | n.2190A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.12 |
inhA | 1674830 | p.Glu210Val | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167846 | p.Ser923Gly | missense_variant | 0.17 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2169149 | c.1464G>C | synonymous_variant | 1.0 |
PPE35 | 2170677 | c.-65G>T | upstream_gene_variant | 0.12 |
Rv1979c | 2221733 | p.Pro478Thr | missense_variant | 0.1 |
Rv1979c | 2223187 | c.-23C>T | upstream_gene_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065405 | p.Gly263Ser | missense_variant | 0.11 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 0.94 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244782 | p.Arg517Leu | missense_variant | 0.11 |
embB | 4248820 | c.2307C>A | synonymous_variant | 0.13 |
embB | 4249754 | p.Gly1081Ser | missense_variant | 0.22 |
aftB | 4267455 | p.Asp461Gly | missense_variant | 1.0 |
ubiA | 4269227 | p.Gly203Ser | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |