Run ID: SRR6982001
Sample name:
Date: 04-04-2023 18:24:18
Number of reads: 616396
Percentage reads mapped: 99.19
Strain: lineage2.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9459 | p.Gly720Ser | missense_variant | 0.12 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620184 | c.294C>A | synonymous_variant | 0.12 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777741 | p.Val247Ala | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1407321 | p.Gly7Val | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168141 | p.Phe824Leu | missense_variant | 0.12 |
Rv1979c | 2223014 | p.Tyr51Asn | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288895 | c.338_346delGCACGCCAC | disruptive_inframe_deletion | 0.59 |
eis | 2714846 | p.Val163Ile | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
ddn | 3986733 | c.-111C>A | upstream_gene_variant | 0.11 |
clpC1 | 4040835 | c.-131G>T | upstream_gene_variant | 0.11 |
embC | 4240772 | c.910_911insG | frameshift_variant | 0.11 |
embC | 4240777 | c.915G>A | synonymous_variant | 0.11 |
embC | 4240779 | p.His306Pro | missense_variant | 0.11 |
embC | 4240792 | p.Met310Ile | missense_variant | 0.11 |
embC | 4240808 | p.Trp316Met | missense_variant | 0.11 |
embC | 4240811 | p.Phe317Leu | missense_variant | 0.11 |
embC | 4240815 | c.954delC | frameshift_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243669 | p.Gly146Val | missense_variant | 0.11 |
embB | 4248115 | c.1602C>T | synonymous_variant | 1.0 |
embB | 4249198 | c.2685G>T | synonymous_variant | 0.1 |
embB | 4249325 | p.Lys938Glu | missense_variant | 0.13 |
embB | 4249448 | p.Gly979Ser | missense_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ubiA | 4269445 | p.Val130Asp | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |