Rv0001 - c.939C>A
Drug resistance types
93 Sensitive
2 RR-TB
22 HR-TB
24 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2.1 | 118 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage1.2.1.2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage1.2.1.2.1;lineage2.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.8 | 11 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| M.canetti;lineage4.2 | 1 |
| 1 | |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 39 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11050629 | Sensitive | lineage1.2.1.2.1 | None | SRR24799273 | Sensitive | lineage1.2.1.2.1 | None | SRR22251404 | Sensitive | lineage1.2.1.2.1 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR16058496 | Sensitive | lineage1.2.1.2.1 | None | SRR21733379 | HR-TB | lineage1.2.1.2.1 | None | SRR22249618 | Sensitive | lineage1.2.1.2.1 | None | SRR11972198 | Sensitive | lineage1.2.1.2.1;lineage4.9 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR3275212 | Sensitive | lineage1.2.1.2.1 | nl | ERR7902643 | Sensitive | lineage1.2.1.2.1 | None | SRR6152825 | Sensitive | lineage1.2.1.2.1 | ca | SRR5341272 | HR-TB | lineage1.2.1.2.1 | in | DRR130148 | MDR-TB | lineage1.2.1.2.1 | None | SRR3724763 | Sensitive | lineage1.2.1.2.1;lineage2.2.1 | None | SRR16100732 | Other | lineage1.2.1.2.1 | None | SRR16058415 | Sensitive | lineage1.2.1.2.1 | None | SRR12006614 | Sensitive | lineage1.2.1.2.1 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3256269 | Sensitive | lineage1.2.1.2.1 | ph | SRR28409440 | Sensitive | lineage1.2.1.2.1 | None | SRR28409439 | Sensitive | lineage1.2.1.2.1 | None | SRR28409727 | Sensitive | lineage1.2.1.2.1 | None | ERR11775978 | MDR-TB | lineage1.2.1.2.1 | None | SRR28375413 | Sensitive | lineage1.2.1.2.1 | None | SRR16058458 | Sensitive | lineage1.2.1.2.1 | None | SRR22251078 | Sensitive | lineage1.2.1.2.1 | None | SRR6152766 | Other | lineage1.2.1.2.1 | ca | DRR473816 | HR-TB | lineage1.2.1.2.1 | None | ERR9121124 | Sensitive | lineage4.8 | None | ERR228282 | Sensitive | lineage1.2.1.2.1 | None | ERR2512915 | Sensitive | lineage1.2.1.2.1 | gb | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR21722105 | MDR-TB | lineage1.2.1.2.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR16370319 | Sensitive | lineage1.2.1.2.1 | None | SRR21709849 | Sensitive | lineage1.2.1.2.1 | None | ERR6336737 | Sensitive | lineage1.2.1.2.1 | None | SRR12006666 | Sensitive | lineage1.2.1.2.1 | None | SRR21733182 | MDR-TB | lineage1.2.1.2.1 | None | SRR21728342 | Sensitive | lineage1.2.1.2.1 | None | ERR4816708 | Sensitive | lineage1.2.1.2.1 | None | ERR9125296 | Sensitive | lineage1.2.1.2.1 | None | ERR6336721 | Sensitive | lineage1.2.1.2.1 | None | ERR6336773 | Sensitive | lineage1.2.1.2.1 | None | ERR9125242 | Sensitive | lineage1.2.1.2.1 | None | ERR4816497 | HR-TB | lineage1.2.1.2.1 | None | ERR9125386 | Sensitive | lineage1.2.1.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR14520020 | Sensitive | lineage1.2.1.2.1 | None | ERR4821965 | Sensitive | lineage4.8 | None | ERR4819673 | MDR-TB | lineage1.2.1.2.1 | gb | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR7902610 | HR-TB | lineage1.2.1.2.1 | None | ERR552371 | HR-TB | lineage4.8 | de | ERR4819067 | Sensitive | lineage1.2.1.2.1 | None | SRR2100957 | Sensitive | lineage1.2.1.2.1 | None | SRR21690771 | HR-TB | lineage1.2.1.2.1 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR6336785 | Sensitive | lineage1.2.1.2.1 | None | SRR6152649 | Sensitive | lineage1.2.1.2.1 | ca | ERR4195343 | Sensitive | lineage4.8 | None | ERR4829654 | Sensitive | lineage1.2.1.2.1 | it | ERR4820893 | Sensitive | lineage1.2.1.2.1 | gb | SRR5065503 | Sensitive | lineage1.2.1.2.1 | vn | ERR4195822 | Sensitive | lineage4.8 | None | ERR12860986 | MDR-TB | lineage1.2.1.2.1 | None | SRR28409411 | HR-TB | lineage1.2.1.2.1 | None | ERR4829559 | Sensitive | lineage1.2.1.2.1 | it | ERR4820935 | Sensitive | lineage1.2.1.2.1 | gb | ERR2517415 | Sensitive | lineage1.2.1.2.1 | nl | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6152903 | Sensitive | lineage1.2.1.2.1 | ca | ERR4816434 | Sensitive | lineage1.2.1.2.1 | gb | ERR4819460 | Sensitive | lineage1.2.1.2.1 | gb | SRR6397987 | Sensitive | lineage1.2.1.2.1 | ca | SRR6152911 | HR-TB | lineage1.2.1.2.1 | ca | SRR21732368 | Sensitive | lineage1.2.1.2.1 | None | ERR3275987 | HR-TB | lineage1.2.1.2.1 | nl | SRR12006575 | Sensitive | lineage1.2.1.2.1 | None | ERR278576 | Sensitive | lineage1.2.1.2.1 | None | ERR9121419 | Sensitive | lineage4.8 | None | ERR3256248 | Sensitive | lineage1.2.1.2.1 | ph | ERR3256274 | Sensitive | lineage1.2.1.2.1 | ph | SRR19325523 | Sensitive | lineage1.2.1.2.1 | None | SRR6152876 | HR-TB | lineage1.2.1.2.1 | ca | SRR21733276 | Sensitive | lineage1.2.1.2.1 | None | ERR2446470 | Sensitive | lineage1.2.1.2.1 | nl | SRR12882525 | HR-TB | lineage1.2.1.2.1 | None | ERR10465778 | HR-TB | lineage1.2.1.2.1 | None | SRR14519720 | Sensitive | lineage1.2.1.2.1 | None | ERR386935 | Sensitive | lineage1.2.1.2.1 | None | SRR21657210 | Sensitive | lineage1.2.1.2.1 | None | SRR6153139 | Sensitive | lineage1.2.1.2.1 | ca | SRR12882514 | MDR-TB | lineage1.2.1.2.1 | None | ERR12544121 | Sensitive | lineage4.8 | None | ERR2514600 | Sensitive | lineage1.2.1.2.1 | gb | SRR28170769 | Sensitive | lineage1.2.1.2.1 | None | ERR4822367 | MDR-TB | lineage1.2.1.2.1 | None | ERR9125874 | Sensitive | lineage1.2.1.2.1 | None | SRR2100635 | Sensitive | lineage1.2.1.2.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6153087 | HR-TB | lineage1.2.1.2.1 | ca | ERR11081871 | MDR-TB | lineage4.8 | None | SRR7070306 | HR-TB | lineage1.2.1.2.1 | None | ERR9125717 | Sensitive | lineage1.2.1.2.1 | None | SRR6152779 | Sensitive | lineage1.2.1.2.1 | ca | ERR3275187 | Sensitive | lineage1.2.1.2.1 | nl | SRR18213707 | Sensitive | lineage1.2.1.2.1 | None | ERR11044510 | Sensitive | lineage1.2.1.2.1 | None | SRR6152669 | Sensitive | lineage1.2.1.2.1 | ca | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR11082085 | Sensitive | lineage4.8 | None | SRR6152932 | HR-TB | lineage1.2.1.2.1 | ca | SRR26112286 | HR-TB | lineage1.2.1.2.1 | None | SRR6152767 | HR-TB | lineage1.2.1.2.1 | ca | SRR22249430 | HR-TB | lineage1.2.1.2.1 | None | SRR7496517 | Other | None | SRR27450367 | Sensitive | lineage1.2.1.2.1 | None | DRR130216 | MDR-TB | lineage1.2.1.2.1 | None | ERR11068908 | MDR-TB | lineage1.2.1.2.1 | None | SRR21690415 | Sensitive | lineage4.8 | None | SRR23316607 | HR-TB | lineage1.2.1.2.1 | None | ERR6336689 | Sensitive | lineage1.2.1.2.1 | None | SRR6152992 | HR-TB | lineage1.2.1.2.1 | ca | SRR21732435 | Sensitive | lineage1.2.1.2.1 | None | SRR6153188 | Sensitive | lineage1.2.1.2.1 | ca | SRR5709997 | Sensitive | lineage1.2.1.2.1 | th | ERR11082400 | Sensitive | lineage4.8 | None | DRR130067 | MDR-TB | lineage1.2.1.2.1 | None | ERR7902771 | HR-TB | lineage1.2.1.2.1 | None | ERR7902746 | Sensitive | lineage1.2.1.2.1 | None | SRR3675586 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR16058170 | Sensitive | lineage1.2.1.2.1 | None | SRR21732867 | Sensitive | lineage1.2.1.2.1 | None | ERR2446518 | Sensitive | lineage1.2.1.2.1 | nl | SRR16058298 | Sensitive | lineage1.2.1.2.1 | None | ERR3256235 | MDR-TB | lineage1.2.1.2.1 | ph | ERR2517542 | Sensitive | lineage1.2.1.2.1 | nl | ERR11067941 | MDR-TB | lineage1.2.1.2.1 | None | SRR24799282 | Sensitive | lineage1.2.1.2.1 | None | SRR22249434 | Sensitive | lineage1.2.1.2.1 | None | SRR26112402 | Sensitive | lineage1.2.1.2.1 | None | DRR188845 | Sensitive | lineage1.2.1.2.1 | None |
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