Rv0001 - c.939C>A
Drug resistance types
120 Sensitive
2 RR-TB
25 HR-TB
31 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.1.2.1 | 160 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 15 |
| lineage1.2.1.2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| 1 | |
| lineage1.2.1.2.1;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 190 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR6153188 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR6152911 | HR-TB | lineage1.2.1.2.1 | ca |
| SRR6153087 | HR-TB | lineage1.2.1.2.1 | ca |
| SRR6152779 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR28409411 | HR-TB | lineage1.2.1.2.1 | None |
| SRR6152876 | HR-TB | lineage1.2.1.2.1 | ca |
| ERR4820893 | Sensitive | lineage1.2.1.2.1 | gb |
| ERR4816434 | Sensitive | lineage1.2.1.2.1 | gb |
| ERR4816708 | Sensitive | lineage1.2.1.2.1 | None |
| ERR11067941 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR16100732 | Other | lineage1.2.1.2.1 | None |
| SRR21728342 | Sensitive | lineage1.2.1.2.1 | None |
| SRR12006575 | Sensitive | lineage1.2.1.2.1 | None |
| SRR22249434 | Sensitive | lineage1.2.1.2.1 | None |
| SRR30182831 | Sensitive | lineage1.2.1.2.1 | None |
| SRR26112402 | Sensitive | lineage1.2.1.2.1 | None |
| ERR6336773 | Sensitive | lineage1.2.1.2.1 | None |
| SRR12006614 | Sensitive | lineage1.2.1.2.1 | None |
| ERR4829654 | Sensitive | lineage1.2.1.2.1 | it |
| ERR228282 | Sensitive | lineage1.2.1.2.1 | None |
| DRR130216 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| SRR16058496 | Sensitive | lineage1.2.1.2.1 | None |
| SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None |
| ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
| SRR16370319 | Sensitive | lineage1.2.1.2.1 | None |
| ERR12860986 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR27450367 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21709849 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13254142 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR21732368 | Sensitive | lineage1.2.1.2.1 | None |
| SRR30182478 | Sensitive | lineage1.2.1.2.1 | None |
| ERR6336689 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29126710 | Sensitive | lineage1.2.1.2.1 | None |
| ERR7902746 | Sensitive | lineage1.2.1.2.1 | None |
| SRR30031209 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29080987 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR13252293 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13093930 | RR-TB | lineage1.2.1.2.1 | None |
| DRR188845 | Sensitive | lineage1.2.1.2.1 | None |
| ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None |
| SRR14520020 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29053267 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29441111 | Sensitive | lineage1.2.1.2.1 | None |
| ERR12544121 | Sensitive | lineage4.8 | None |
| SRR21732991 | Sensitive | lineage1.2.1.2.1 | None |
| SRR22249618 | Sensitive | lineage1.2.1.2.1 | None |
| SRR11972198 | Sensitive | lineage1.2.1.2.1;lineage4.9 | None |
| ERR4822367 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR4821965 | Sensitive | lineage4.8 | None |
| ERR7902643 | Sensitive | lineage1.2.1.2.1 | None |
| ERR11044510 | Sensitive | lineage1.2.1.2.1 | None |
| SRR28868841 | Sensitive | lineage1.2.1.2.1 | None |
| SRR28409439 | Sensitive | lineage1.2.1.2.1 | None |
| DRR130068 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR29127084 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21690771 | HR-TB | lineage1.2.1.2.1 | None |
| ERR3275187 | Sensitive | lineage1.2.1.2.1 | nl |
| ERR4819067 | Sensitive | lineage1.2.1.2.1 | None |
| SRR18213707 | Sensitive | lineage1.2.1.2.1 | None |
| SRR28868663 | Sensitive | lineage1.2.1.2.1 | None |
| SRR30182737 | HR-TB | lineage1.2.1.2.1 | None |
| ERR11775978 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR16058298 | Sensitive | lineage1.2.1.2.1 | None |
| SRR6152825 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR28409440 | Sensitive | lineage1.2.1.2.1 | None |
| SRR6397987 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR6152766 | Other | lineage1.2.1.2.1 | ca |
| SRR6152992 | HR-TB | lineage1.2.1.2.1 | ca |
| SRR6153139 | Sensitive | lineage1.2.1.2.1 | ca |
| DRR130148 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR6336737 | Sensitive | lineage1.2.1.2.1 | None |
| SRR19325523 | Sensitive | lineage1.2.1.2.1 | None |
| ERR552371 | HR-TB | lineage4.8 | de |
| ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None |
| ERR9125386 | Sensitive | lineage1.2.1.2.1 | None |
| ERR9125874 | Sensitive | lineage1.2.1.2.1 | None |
| SRR26112286 | HR-TB | lineage1.2.1.2.1 | None |
| SRR28409727 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29052791 | Sensitive | lineage1.2.1.2.1 | None |
| SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None |
| ERR13254252 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR13276122 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR16058458 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21732435 | Sensitive | lineage1.2.1.2.1 | None |
| ERR2517415 | Sensitive | lineage1.2.1.2.1 | nl |
| ERR11068908 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR2512915 | Sensitive | lineage1.2.1.2.1 | gb |
| ERR4819460 | Sensitive | lineage1.2.1.2.1 | gb |
| SRR5709997 | Sensitive | lineage1.2.1.2.1 | th |
| SRR7496517 | Other | None | |
| SRR3724763 | Sensitive | lineage1.2.1.2.1;lineage2.2.1 | None |
| SRR28375413 | Sensitive | lineage1.2.1.2.1 | None |
| ERR9121419 | Sensitive | lineage4.8 | None |
| ERR13291847 | Other | lineage1.2.1.2.1 | None |
| SRR28858431 | Other | lineage1.2.1.2.1 | None |
| ERR3275987 | HR-TB | lineage1.2.1.2.1 | nl |
| ERR2446518 | Sensitive | lineage1.2.1.2.1 | nl |
| SRR12882514 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR28868428 | Other | lineage1.2.1.2.1 | None |
| ERR3256274 | Sensitive | lineage1.2.1.2.1 | ph |
| SRR30336523 | Sensitive | lineage1.2.1.2.1 | None |
| ERR6336721 | Sensitive | lineage1.2.1.2.1 | None |
| ERR3256235 | MDR-TB | lineage1.2.1.2.1 | ph |
| ERR12268407 | Sensitive | lineage4.8 | None |
| SRR24799282 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21733276 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29096455 | Sensitive | lineage1.2.1.2.1 | None |
| ERR6336785 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13260055 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR29440553 | Other | lineage1.2.1.2.1 | None |
| SRR14519720 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21657210 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13260077 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR13254231 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR9125717 | Sensitive | lineage1.2.1.2.1 | None |
| ERR386935 | Sensitive | lineage1.2.1.2.1 | None |
| ERR2514600 | Sensitive | lineage1.2.1.2.1 | gb |
| ERR13093926 | Sensitive | lineage1.2.1.2.1 | None |
| ERR4819673 | MDR-TB | lineage1.2.1.2.1 | gb |
| ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None |
| SRR28868590 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21690415 | Sensitive | lineage4.8 | None |
| ERR13291938 | Sensitive | lineage1.2.1.2.1 | None |
| ERR3256248 | Sensitive | lineage1.2.1.2.1 | ph |
| SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None |
| ERR278576 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13284089 | MDR-TB | lineage4.8 | None |
| ERR11082085 | Sensitive | lineage4.8 | None |
| SRR21722105 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR3256269 | Sensitive | lineage1.2.1.2.1 | ph |
| SRR6152767 | HR-TB | lineage1.2.1.2.1 | ca |
| SRR6152903 | Sensitive | lineage1.2.1.2.1 | ca |
| ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
| ERR7902771 | HR-TB | lineage1.2.1.2.1 | None |
| ERR9125242 | Sensitive | lineage1.2.1.2.1 | None |
| SRR2100635 | Sensitive | lineage1.2.1.2.1 | None |
| SRR2100957 | Sensitive | lineage1.2.1.2.1 | None |
| SRR12006666 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29441102 | Sensitive | lineage1.2.1.2.1 | None |
| ERR11050629 | Sensitive | lineage1.2.1.2.1 | None |
| SRR22251078 | Sensitive | lineage1.2.1.2.1 | None |
| ERR4820935 | Sensitive | lineage1.2.1.2.1 | gb |
| SRR21733379 | HR-TB | lineage1.2.1.2.1 | None |
| ERR2446470 | Sensitive | lineage1.2.1.2.1 | nl |
| ERR9121124 | Sensitive | lineage4.8 | None |
| SRR23316607 | HR-TB | lineage1.2.1.2.1 | None |
| SRR16058415 | Sensitive | lineage1.2.1.2.1 | None |
| SRR7070306 | HR-TB | lineage1.2.1.2.1 | None |
| SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None |
| DRR130067 | MDR-TB | lineage1.2.1.2.1 | None |
| ERR13273015 | Sensitive | lineage4.8 | None |
| SRR21733182 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR16058170 | Sensitive | lineage1.2.1.2.1 | None |
| SRR21732867 | Sensitive | lineage1.2.1.2.1 | None |
| ERR13285659 | Sensitive | lineage4.8 | None |
| ERR11081871 | MDR-TB | lineage4.8 | None |
| ERR9125296 | Sensitive | lineage1.2.1.2.1 | None |
| SRR28868691 | Sensitive | lineage1.2.1.2.1 | None |
| ERR2517542 | Sensitive | lineage1.2.1.2.1 | nl |
| SRR12882525 | HR-TB | lineage1.2.1.2.1 | None |
| ERR4816497 | HR-TB | lineage1.2.1.2.1 | None |
| SRR29440611 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR24799273 | Sensitive | lineage1.2.1.2.1 | None |
| ERR11082400 | Sensitive | lineage4.8 | None |
| SRR22251404 | Sensitive | lineage1.2.1.2.1 | None |
| SRR30182354 | HR-TB | lineage1.2.1.2.1 | None |
| SRR30336510 | Sensitive | lineage1.2.1.2.1 | None |
| SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None |
| ERR7902610 | HR-TB | lineage1.2.1.2.1 | None |
| ERR4195822 | Sensitive | lineage4.8 | None |
| ERR3275212 | Sensitive | lineage1.2.1.2.1 | nl |
| SRR28170769 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29053395 | Sensitive | lineage1.2.1.2.1 | None |
| SRR22249430 | HR-TB | lineage1.2.1.2.1 | None |
| SRR5341272 | HR-TB | lineage1.2.1.2.1 | in |
| SRR5065503 | Sensitive | lineage1.2.1.2.1 | vn |
| ERR13291676 | MDR-TB | lineage1.2.1.2.1 | None |
| SRR29052654 | Sensitive | lineage1.2.1.2.1 | None |
| SRR29126773 | Sensitive | lineage1.2.1.2.1 | None |
| ERR10465778 | HR-TB | lineage1.2.1.2.1 | None |
| ERR4829559 | Sensitive | lineage1.2.1.2.1 | it |
| SRR29440624 | HR-TB | lineage1.2.1.2.1 | None |
| ERR403298 | MDR-TB | M.canetti;lineage4.2 | None |
| DRR473816 | HR-TB | lineage1.2.1.2.1 | None |
| ERR4195343 | Sensitive | lineage4.8 | None |
| ERR13291931 | Sensitive | lineage1.2.1.2.1 | None |
| SRR6152669 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR6152649 | Sensitive | lineage1.2.1.2.1 | ca |
| SRR6152932 | HR-TB | lineage1.2.1.2.1 | ca |
