Rv0005 - c.108G>C
Drug resistance types
68 Sensitive
1 RR-TB
61 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 34 |
| 67 | |
| lineage3.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| La1.8.1 | 3 |
| lineage4.8.2 | 2 |
| lineage4.1.1 | 5 |
| lineage3.1.1 | 3 |
| lineage3.1.2 | 5 |
| lineage4.1.2.1 | 2 |
| lineage4.8 | 1 |
| lineage4.9 | 30 |
| La3 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 1 |
| La1.7.1 | 1 |
| lineage4.3 | 1 |
| lineage4.9.1 | 2 |
| lineage1.1.3.2 | 1 |
| lineage2.2.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.6.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 172 |
Geographic prevalence
Country level data for this variant is available for 18 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7535082 | Sensitive | lineage4 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR036225 | Other | lineage4.3.4.2.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR046749 | Other | La1.8.1 | gb | ERR037514 | Sensitive | lineage4.3.4.2.1 | mw | ERR046765 | Sensitive | lineage4.8.2 | gb | ERR046736 | Sensitive | lineage4.1.1 | gb | ERR046773 | Sensitive | lineage3.1.1 | gb | ERR046766 | Sensitive | lineage4.8.2 | gb | ERR046775 | Sensitive | lineage3.1.1 | gb | ERR046816 | Other | lineage3.1.2 | None | ERR046873 | Sensitive | lineage4.1.2.1 | gb | ERR046815 | Sensitive | lineage3.1.2 | None | ERR046830 | Sensitive | lineage3.1.2 | None | ERR046874 | Sensitive | lineage4.1.2.1 | gb | ERR046916 | Sensitive | lineage4.1.1 | gb | ERR046931 | Sensitive | lineage4.1.1 | None | ERR046998 | Sensitive | lineage4.8 | gb | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR046997 | Sensitive | lineage4 | gb | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR4811105 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4811022 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | SRR1167384 | Other | lineage4 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1172857 | MDR-TB | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1173629 | Other | None | SRR1172951 | Other | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1184380 | HR-TB | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR2100085 | Sensitive | lineage3.1.2 | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1792002 | Other | La1.7.1 | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR1791838 | Other | La1.8.1 | None | SRR1792059 | Other | La1.8.1 | None | SRR2100093 | Sensitive | lineage4.1.1 | None | SRR2100086 | Other | lineage3.1.2 | None | ERR176643 | HR-TB | None | ERR176779 | HR-TB | None | ERR1035239 | HR-TB | None | ERR181887 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR161033 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176751 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212033 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR234659 | HR-TB | None | SRR3742665 | HR-TB | None | ERR245719 | Sensitive | lineage4.9.1 | mw | ERR245750 | Sensitive | lineage4.3.4.2.1 | mw | ERR4819051 | Other | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR245840 | Sensitive | lineage3.1.1 | mw | ERR245761 | Sensitive | lineage1.1.3.2 | mw | ERR245831 | Sensitive | lineage2.2.1 | mw | ERR245785 | Sensitive | lineage4.9 | mw | ERR245809 | Sensitive | lineage4.3.4.1 | None | ERR245823 | Sensitive | lineage4.1.1.3 | None | ERR4818615 | Other | None | ERR245846 | Sensitive | lineage2.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | ERR2693239 | HR-TB | None | ERR2516712 | MDR-TB | lineage4.6.1.2 | None | ERR278594 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6325448 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6046540 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None |
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