SRR28393495
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28393618
|
MDR-TB
|
lineage4
|
None
|
SRR28706488
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533754
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534067
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR30180419
|
MDR-TB
|
lineage4.5
|
None
|
ERR067581
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR21658370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831463
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR11972293
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551804
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552144_ERR552143_ERR552142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552143
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550751
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR369691
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR551780
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534518
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551362_ERR551360_ERR551361
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533622
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR1035085
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR551974_ERR551973
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043757
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551172_ERR551173_ERR551171
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207126
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR12420412
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232605
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045558
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR671754
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4828033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831018
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR552816_ERR552815_ERR552814
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025724
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR553394
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257021
|
MDR-TB
|
lineage2.2.1
|
ru
|
SAMEA2534986
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552834
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552794
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550664_ERR550663
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827987
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538966
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830957
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR550725
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550950
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865722
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865937
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794391
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10828186
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4810973
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2307592
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096357
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR551173
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552012
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831467
|
MDR-TB
|
lineage3
|
None
|
ERR552142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865147
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910931
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR11972306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156268
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534616
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR11043467
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR26159064
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SAMEA2533444
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR28394246
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865719
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824377
|
MDR-TB
|
lineage2.2.1.1
|
cn
|
SRR6824454
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553152_ERR553153
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551781
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044180
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR3794518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552748
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553184_ERR553183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488988
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865146
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552909
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR775329
|
MDR-TB
|
lineage4.3.4.1
|
pe
|
ERR3639760
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR4011079
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6485130
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15364444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706393
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16156202
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552926_ERR552927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552661_ERR552660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096323
|
MDR-TB
|
lineage3
|
None
|
ERR4827479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552747
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551775
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822603
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR550736_ERR550735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112867
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866240
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232488
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550883
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551361
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828615
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4812836
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13259302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831457
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11811378
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2020075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551599_ERR551600
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533377
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR229978
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR5864483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865320
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534489
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR1166138
|
MDR-TB
|
lineage4.1.2.1
|
ro
|
ERR551362
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533596
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4830080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10430344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207382
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827575
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799951
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR550651_ERR550652
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662307
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR552011
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551137_ERR551138
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551945
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276874
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552216
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285817
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987760
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796837
|
MDR-TB
|
lineage3
|
in
|
ERR551599
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552883_ERR552882
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552545_ERR552546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551806
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515949
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR553188
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551133_ERR551132
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800013
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR550885
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534804
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4800322
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR552200
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552257
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865318
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552390_ERR552389
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534840
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534992
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10040471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156258
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420635
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534749
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533776
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR15600371
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR9807009
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715136
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403267
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR551600
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551639
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987390
|
HR-TB
|
lineage2.2.1
|
None
|
ERR551495_ERR551496
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534763
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10303341
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831453
|
MDR-TB
|
lineage3
|
None
|
SRR25827888
|
XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
ERR552661
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552217
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551804_ERR551805_ERR551806
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794526
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534205
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4831468
|
MDR-TB
|
lineage3
|
None
|
SAMEA2534496
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550980_ERR550981
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827916
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709821
|
MDR-TB
|
lineage4.4.2
|
th
|
ERR552741_ERR552740
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553051_ERR553050
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29053410
|
MDR-TB
|
lineage3
|
None
|
SRR28119722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13259277
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910993
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR16156204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576667
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533440
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552545
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120070
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751608
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SAMEA2533726
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR6832434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551738_ERR551737
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794498
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552447
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551496
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551821
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551000_ERR550999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866545
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207000
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551142_ERR551141
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865987
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550743
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552882
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710083
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260245
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR553190
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13262083
|
Pre-XDR-TB
|
lineage3
|
None
|
SAMEA2535198
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533542
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534086
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534862
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR28351504
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351599
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2199786
|
MDR-TB
|
lineage2.2.1
|
de
|
SRR13355780
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796452
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR2510297
|
MDR-TB
|
lineage3
|
pk
|
ERR550960_ERR550961
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824311
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551133
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21747073
|
MDR-TB
|
lineage4.5
|
None
|
SAMEA2533724
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2535005
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2535098
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534924
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10040165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR2100257
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813195
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR3105780
|
MDR-TB
|
lineage3
|
None
|
ERR551138
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550652
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534157
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552520
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552571
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723591
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR552926
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534185
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR1723695
|
HR-TB
|
lineage2.2.1.1
|
None
|
SAMEA2534721
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4827668
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822608
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR28706501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651638
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4831020
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR3618864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552519
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5341210
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR8651631
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR552906
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551320_ERR551321
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550829_ERR550830
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553716
|
MDR-TB
|
lineage4
|
None
|
ERR551284_ERR551285
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552197
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533610
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534197
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10397219
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551641
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824365
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551822
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911584
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR551321
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827630
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576582
|
MDR-TB
|
lineage2.1
|
None
|
SRR13232621
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748397
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551137
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533574
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551210
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533856
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551973
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794467
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865149
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046347
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR7911342
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR551430
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR11972372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827665
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3725722
|
MDR-TB
|
lineage4.1.3
|
ci
|
ERR551736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13583331
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1723798
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR552216_ERR552215_ERR552217
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535203
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550960
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550988_ERR550989_ERR550990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552833_ERR552834
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911380
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737717
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR551000
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232656
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156209
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552446_ERR552447
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865939
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552709_ERR552708
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551811_ERR551810_ERR551809
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799043
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR11972432
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287483
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4796875
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR2510235
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR551051_ERR551052
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533423
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4797689
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799257
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR550812
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534938
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4827928
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5864485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552794_ERR552793
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782528
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751563
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR1034640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551610_ERR551611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706380
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831022
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4828038
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865720
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29081601
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4799878
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR551738
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041788
|
RR-TB
|
lineage4.1.2.1
|
rs
|
ERR551944
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865776
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827776
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550886
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551810
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397185
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR553189
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798637
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR3619841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535201
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550949
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552517
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533879
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533941
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR29017136
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR4828069
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551284
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551436
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534654
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2535338
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4830986
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR552607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553050
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553365
|
Other
|
lineage2.2.1
|
None
|
ERR551793
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2184607
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR553189_ERR553188_ERR553190
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516471
|
MDR-TB
|
lineage1.1.2
|
nl
|
ERR551259
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552907
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794406
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112858
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550725_ERR550724
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273901
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR550830
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551735_ERR551736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553364_ERR553365_ERR553363
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488987
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551132
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709935
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864482
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10500305
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR550663
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035359
|
Pre-XDR-TB
|
lineage4.3.4.1
|
br
|
ERR553194
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550651
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534058
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR9120071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29050683
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA2533664
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR5865148
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533615
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR10748183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550988
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552389
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552144
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260087
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551944_ERR551945_ERR551943
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550808_ERR550809
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552198_ERR552199_ERR552197_ERR552200
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533730
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR13276210
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535177
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10397117
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551353
|
Other
|
lineage2.2.1
|
None
|
ERR552226_ERR552225
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553194_ERR553195
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552815
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011933
|
MDR-TB
|
lineage3.1.1;lineage4.6.3
|
None
|
ERR550961
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551821_ERR551822
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794442
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748380
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812567
|
MDR-TB
|
lineage4
|
pe
|
ERR4809243
|
RR-TB
|
lineage2.2.1.1
|
za
|
ERR4872137
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR7653609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723764
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551378_ERR551377_ERR551379
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827845
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1768633
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550989
|
RR-TB
|
lineage2.2.1
|
None
|
SAMEA2533898
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533505
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR3794474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865775
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813473
|
MDR-TB
|
lineage4.3.4.1
|
pe
|
ERR551780_ERR551781
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534187
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551360
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710139
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156295
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550932
|
Other
|
lineage2.2.1
|
None
|
ERR13289499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23938641
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794449
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794551
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13258824
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553787
|
MDR-TB
|
|
None
|
SRR10303316
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865865
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810976
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR16157125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR552896
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552225
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794445
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831250
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR21576728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796536
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR553184
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153328
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR779865
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR8665691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552741
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553363
|
RR-TB
|
lineage2.2.1
|
None
|
SRR16370241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551805
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534739
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR29094013
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR2010514
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533433
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552814
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831448
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR550744
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034876
|
MDR-TB
|
lineage2.2.1
|
pt
|
ERR551258_ERR551259
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232737
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534216
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR11972283
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403268
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830146
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23938679
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117931
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR550744_ERR550743
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552897_ERR552896
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801512
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR29289147
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR550933_ERR550932_ERR550934
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550664
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830164
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794512
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551379
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552905
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553719
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR10762432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551610
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552740
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797278
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR3743499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534977
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR5866239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794403
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552570_ERR552571_ERR552569
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552103
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552897
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551258
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552833
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972188
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796734
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5153864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794548
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207280
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SAMEA2533368
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552569
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533887
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534307
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10040327
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6930924
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR551638_ERR551639_ERR551637_ERR551641_ERR551640
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806983
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551811
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551320
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552257_ERR552258
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550887_ERR550883_ERR550886_ERR550884_ERR550882_ERR550885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662377
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4831244
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR551141
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866255
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774579
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533814
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552607_ERR552606
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706453
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748279
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552104
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807703
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502895
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972187
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938650
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25534213
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046340
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6256968
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5979461
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR6358844
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR14782425
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709915
|
MDR-TB
|
lineage4.4.2
|
th
|
SRR14801695
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156203
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266678
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR5866238
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2179796
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR11775769
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551145
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR117695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552906_ERR552907_ERR552905_ERR552909_ERR552908
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762279
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799721
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR10808898
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552586_ERR552585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707013
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
SAMEA2535362
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552215
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552258
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552793
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR553183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794475
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737741
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4831026
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR550829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551352_ERR551353
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872136
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR3794404
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553152
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8976090
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR551776_ERR551777_ERR551775
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11786876
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351353
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232491
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831016
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR550934
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305999
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR551121
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550980
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533585
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR552226
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706629
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552198
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552708
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267084
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534703
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4827590
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665690
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552441
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550949_ERR550950
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551352
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802112
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156220
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539212
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261622
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR550752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515988
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2516496
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29539455
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539193
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093829
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516285
|
Pre-XDR-TB
|
lineage2.2.1
|
be
|
SRR24709961
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709983
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29017127
|
MDR-TB
|
lineage3
|
None
|
ERR551637
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552570
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552709
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534350
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR11972324
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510445
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2515743
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831449
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR551199
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551794
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662171
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR29096312
|
MDR-TB
|
lineage3.1.1;lineage4.6.3
|
None
|
ERR551437
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552390
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553153
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207032
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827580
|
MDR-TB
|
lineage3
|
None
|
SAMEA2534479
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534869
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR11773837
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794537
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13259974
|
MDR-TB
|
lineage3
|
None
|
SRR16156740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290719
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550751_ERR550750_ERR550752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551211
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550933
|
RR-TB
|
lineage2.2.1
|
None
|
SAMN03246429
|
MDR-TB
|
lineage2.2.1.1
|
cn
|
ERR228056
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR551052
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662360
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR550999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972319
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR551285
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232649
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551795_ERR551794_ERR551793
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553393
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550750
|
RR-TB
|
lineage2.2.1
|
None
|
ERR552747_ERR552748_ERR552746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653181
|
RR-TB
|
lineage4.3.3
|
None
|
ERR4813766
|
MDR-TB
|
lineage4.1.2
|
br
|
ERR2020046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551210_ERR551211
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13355774
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551437_ERR551436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938604
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552011_ERR552012
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798556
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234649
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR19320507
|
MDR-TB
|
lineage3
|
None
|
ERR551809
|
RR-TB
|
lineage2.2.1
|
None
|
SRR24709902
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551378
|
HR-TB
|
lineage2.2.1
|
None
|
SRR13232570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551776
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798364
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR10430394
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551795
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865938
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552103_ERR552104
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552199
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552883
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798419
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR551737
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534908
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR550882
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22250194
|
MDR-TB
|
lineage3
|
None
|
SRR24256255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866254
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911381
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671798
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR5864487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552519_ERR552520
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534156
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR5866544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR553394_ERR553393
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794389
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553195
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291094
|
MDR-TB
|
lineage4.5
|
None
|
ERR3794363
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827610
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797108
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMEA2534207
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534326
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR28706638
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR27069387
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552816
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706518
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28394188
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29050893
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3794478
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11811359
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539268
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772609
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR30180199
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797941
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
ERR4798939
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR551777
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552908
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553364
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533485
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533983
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534442
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10305962
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13259313
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510422
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR5865721
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865876
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751547
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR1723696
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4810937
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR13180350
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533835
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR22424806
|
MDR-TB
|
lineage3
|
None
|
SRR20632798
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751570
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR7737939
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR551640
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517371
|
MDR-TB
|
lineage3.1.1
|
nl
|
SRR28394028
|
MDR-TB
|
lineage4
|
None
|
SRR29017410
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR13284050
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056120
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550981
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29081599
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|